Literature DB >> 26430217

Long-Range Chromatin Interactions.

Job Dekker1, Tom Misteli2.   

Abstract

To accommodate genomes in the limited space of the cell nucleus and ensure the correct execution of gene expression programs, genomes are packaged in complex fashion in the three-dimensional cell nucleus. As a consequence of the extensive higher-order organization of chromosomes, distantly located genomic regions on the same or distinct chromosomes undergo long-range interactions. This article discusses the nature of long interactions, mechanisms of their formation, and their emerging functional roles in gene regulation and genome maintenance.
Copyright © 2015 Cold Spring Harbor Laboratory Press; all rights reserved.

Mesh：

Substances：

Year:  2015        PMID： 26430217      PMCID： PMC4588061          DOI： 10.1101/cshperspect.a019356

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN： 1943-0264            Impact factor:   10.005


  140 in total

1.  Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development.

Authors:  Steven T Kosak; Jane A Skok; Kay L Medina; Roy Riblet; Michelle M Le Beau; Amanda G Fisher; Harinder Singh
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

2.  Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors:  Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

3.  Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Authors:  Josée Dostie; Todd A Richmond; Ramy A Arnaout; Rebecca R Selzer; William L Lee; Tracey A Honan; Eric D Rubio; Anton Krumm; Justin Lamb; Chad Nusbaum; Roland D Green; Job Dekker
Journal:  Genome Res       Date:  2006-09-05       Impact factor: 9.043

4.  Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

Authors:  Zhihu Zhao; Gholamreza Tavoosidana; Mikael Sjölinder; Anita Göndör; Piero Mariano; Sha Wang; Chandrasekhar Kanduri; Magda Lezcano; Kuljeet Singh Sandhu; Umashankar Singh; Vinod Pant; Vijay Tiwari; Sreenivasulu Kurukuti; Rolf Ohlsson
Journal:  Nat Genet       Date:  2006-10-08       Impact factor: 38.330

5.  Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic.

Authors:  S Augui; G J Filion; S Huart; E Nora; M Guggiari; M Maresca; A F Stewart; E Heard
Journal:  Science       Date:  2007-12-07       Impact factor: 47.728

6.  Positional stability of single double-strand breaks in mammalian cells.

Authors:  Evi Soutoglou; Jonas F Dorn; Kundan Sengupta; Maria Jasin; Andre Nussenzweig; Thomas Ried; Gaudenz Danuser; Tom Misteli
Journal:  Nat Cell Biol       Date:  2007-05-07       Impact factor: 28.824

7.  G9a selectively represses a class of late-replicating genes at the nuclear periphery.

Authors:  Tomoki Yokochi; Kristina Poduch; Tyrone Ryba; Junjie Lu; Ichiro Hiratani; Makoto Tachibana; Yoichi Shinkai; David M Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-04       Impact factor: 11.205

8.  A map of the cis-regulatory sequences in the mouse genome.

Authors:  Yin Shen; Feng Yue; David F McCleary; Zhen Ye; Lee Edsall; Samantha Kuan; Ulrich Wagner; Jesse Dixon; Leonard Lee; Victor V Lobanenkov; Bing Ren
Journal:  Nature       Date:  2012-08-02       Impact factor: 49.962

9.  A user's guide to the encyclopedia of DNA elements (ENCODE).

Authors: 
Journal:  PLoS Biol       Date:  2011-04-19       Impact factor: 8.029

10.  Recruitment to the nuclear periphery can alter expression of genes in human cells.

Authors:  Lee E Finlan; Duncan Sproul; Inga Thomson; Shelagh Boyle; Elizabeth Kerr; Paul Perry; Bauke Ylstra; Jonathan R Chubb; Wendy A Bickmore
Journal:  PLoS Genet       Date:  2008-03-21       Impact factor: 5.917
View more
  103 in total

Review 1.  Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability.

Authors:  Gerson Rothschild; Uttiya Basu
Journal:  Trends Genet       Date:  2017-01-10       Impact factor: 11.639

Review 2.  Epigenetics in Saccharomyces cerevisiae.

Authors:  Michael Grunstein; Susan M Gasser
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-07-01       Impact factor: 10.005

Review 3.  Position-effect variegation, heterochromatin formation, and gene silencing in Drosophila.

Authors:  Sarah C R Elgin; Gunter Reuter
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-08-01       Impact factor: 10.005

4.  Cell Division: Single-Cell Physiology Reveals Secrets of Chromosome Condensation.

Authors:  Kerry Bloom
Journal:  Curr Biol       Date:  2018-02-05       Impact factor: 10.834

Review 5.  Dosage compensation in Drosophila.

Authors:  John C Lucchesi; Mitzi I Kuroda
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-05-01       Impact factor: 10.005

Review 6.  Chromosome folding: driver or passenger of epigenetic state?

Authors:  Tom Sexton; Eitan Yaffe
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-02-02       Impact factor: 10.005

Review 7.  Epigenetic plasticity and the hallmarks of cancer.

Authors:  William A Flavahan; Elizabeth Gaskell; Bradley E Bernstein
Journal:  Science       Date:  2017-07-21       Impact factor: 47.728

Review 8.  Molecular mechanisms driving transcriptional stress responses.

Authors:  Anniina Vihervaara; Fabiana M Duarte; John T Lis
Journal:  Nat Rev Genet       Date:  2018-06       Impact factor: 53.242

9.  Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling.

Authors:  Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2019-08-06

Review 10.  Epigenetic Determinants of Cancer.

Authors:  Stephen B Baylin; Peter A Jones
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-09-01       Impact factor: 10.005
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.