Literature DB >> 18826948

The transcriptional coactivators SAGA, SWI/SNF, and mediator make distinct contributions to activation of glucose-repressed genes.

Rhiannon K Biddick1, G Lynn Law, Kevin Khaw Beng Chin, Elton T Young.   

Abstract

The paradigm of activation via ordered recruitment has evolved into a complicated picture as the influence of coactivators and chromatin structures on gene regulation becomes understood. We present here a comprehensive study of many elements of activation of ADH2 and FBP1, two glucose-regulated genes. We identify SWI/SNF as the major chromatin-remodeling complex at these genes, whereas SAGA (Spt-Ada-Gcn5-acetyltransferase complex) is required for stable recruitment of other coactivators. Mediator plays a crucial role in expression of both genes but does not affect chromatin remodeling. We found that Adr1 bound unaided by coactivators to ADH2, but Cat8 binding depended on coactivators at FBP1. Taken together, our results suggest that commonly regulated genes share many aspects of activation, but that gene-specific regulators or elements of promoter architecture may account for small differences in the mechanism of activation. Finally, we found that activator overexpression can compensate for the loss of SWI/SNF but not for the loss of SAGA.

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Year:  2008        PMID: 18826948      PMCID: PMC2586256          DOI: 10.1074/jbc.M805258200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  48 in total

1.  Hyperacetylation of chromatin at the ADH2 promoter allows Adr1 to bind in repressed conditions.

Authors:  Loredana Verdone; Jiansheng Wu; Kristen van Riper; Nataly Kacherovsky; Maria Vogelauer; Elton T Young; Michael Grunstein; Ernesto Di Mauro; Micaela Caserta
Journal:  EMBO J       Date:  2002-03-01       Impact factor: 11.598

2.  Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo.

Authors:  Sukesh R Bhaumik; Michael R Green
Journal:  Mol Cell Biol       Date:  2002-11       Impact factor: 4.272

3.  Independent recruitment in vivo by Gal4 of two complexes required for transcription.

Authors:  Gene O Bryant; Mark Ptashne
Journal:  Mol Cell       Date:  2003-05       Impact factor: 17.970

Review 4.  The mediator coactivator complex: functional and physical roles in transcriptional regulation.

Authors:  Brian A Lewis; Danny Reinberg
Journal:  J Cell Sci       Date:  2003-09-15       Impact factor: 5.285

Review 5.  Regulation of transcription: from lambda to eukaryotes.

Authors:  Mark Ptashne
Journal:  Trends Biochem Sci       Date:  2005-06       Impact factor: 13.807

6.  Simultaneous recruitment of coactivators by Gcn4p stimulates multiple steps of transcription in vivo.

Authors:  Chhabi K Govind; Sungpil Yoon; Hongfang Qiu; Sudha Govind; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

7.  Multiple pathways are co-regulated by the protein kinase Snf1 and the transcription factors Adr1 and Cat8.

Authors:  Elton T Young; Kenneth M Dombek; Chris Tachibana; Trey Ideker
Journal:  J Biol Chem       Date:  2003-04-03       Impact factor: 5.157

8.  Regulation of chromatin remodeling by inositol polyphosphates.

Authors:  David J Steger; Elizabeth S Haswell; Aimee L Miller; Susan R Wente; Erin K O'Shea
Journal:  Science       Date:  2002-11-14       Impact factor: 47.728

9.  Regulatory elements in the FBP1 promoter respond differently to glucose-dependent signals in Saccharomyces cerevisiae.

Authors:  O Zaragoza; O Vincent; J M Gancedo
Journal:  Biochem J       Date:  2001-10-01       Impact factor: 3.857

10.  A multiplicity of coactivators is required by Gcn4p at individual promoters in vivo.

Authors:  Mark J Swanson; Hongfang Qiu; Laarni Sumibcay; Anna Krueger; Soon-ja Kim; Krishnamurthy Natarajan; Sungpil Yoon; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2003-04       Impact factor: 4.272

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  28 in total

1.  Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast.

Authors:  Suraiya A Ansari; Mythily Ganapathi; Joris J Benschop; Frank C P Holstege; Joseph T Wade; Randall H Morse
Journal:  EMBO J       Date:  2011-10-04       Impact factor: 11.598

2.  Snf1/AMPK regulates Gcn5 occupancy, H3 acetylation and chromatin remodelling at S. cerevisiae ADY2 promoter.

Authors:  Georgia Abate; Emanuela Bastonini; Katherine A Braun; Loredana Verdone; Elton T Young; Micaela Caserta
Journal:  Biochim Biophys Acta       Date:  2012-01-28

3.  Spatiotemporal cascade of transcription factor binding required for promoter activation.

Authors:  Robert M Yarrington; Jared S Rudd; David J Stillman
Journal:  Mol Cell Biol       Date:  2014-12-15       Impact factor: 4.272

Review 4.  MAP kinases and histone modification.

Authors:  Tamaki Suganuma; Jerry L Workman
Journal:  J Mol Cell Biol       Date:  2012-07-24       Impact factor: 6.216

5.  Nucleosomes Are Essential for Proper Regulation of a Multigated Promoter in Saccharomyces cerevisiae.

Authors:  Robert M Yarrington; Jenna M Goodrum; David J Stillman
Journal:  Genetics       Date:  2015-12-01       Impact factor: 4.562

6.  Toward a global analysis of metabolites in regulatory mutants of yeast.

Authors:  Elizabeth M Humston; Kenneth M Dombek; Benjamin P Tu; Elton T Young; Robert E Synovec
Journal:  Anal Bioanal Chem       Date:  2011-03-17       Impact factor: 4.142

Review 7.  Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators.

Authors:  Steven Hahn; Elton T Young
Journal:  Genetics       Date:  2011-11       Impact factor: 4.562

8.  14-3-3 (Bmh) proteins regulate combinatorial transcription following RNA polymerase II recruitment by binding at Adr1-dependent promoters in Saccharomyces cerevisiae.

Authors:  Katherine A Braun; Pabitra K Parua; Kenneth M Dombek; Gregory E Miner; Elton T Young
Journal:  Mol Cell Biol       Date:  2012-12-03       Impact factor: 4.272

Review 9.  Dancing the cell cycle two-step: regulation of yeast G1-cell-cycle genes by chromatin structure.

Authors:  David J Stillman
Journal:  Trends Biochem Sci       Date:  2013-07-16       Impact factor: 13.807

10.  Mediator, TATA-binding protein, and RNA polymerase II contribute to low histone occupancy at active gene promoters in yeast.

Authors:  Suraiya A Ansari; Emily Paul; Sebastian Sommer; Corinna Lieleg; Qiye He; Alexandre Z Daly; Kara A Rode; Wesley T Barber; Laura C Ellis; Erika LaPorta; Amanda M Orzechowski; Emily Taylor; Tanner Reeb; Jason Wong; Philipp Korber; Randall H Morse
Journal:  J Biol Chem       Date:  2014-04-11       Impact factor: 5.157

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