Literature DB >> 22084422

Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators.

Steven Hahn1, Elton T Young.   

Abstract

Here we review recent advances in understanding the regulation of mRNA synthesis in Saccharomyces cerevisiae. Many fundamental gene regulatory mechanisms have been conserved in all eukaryotes, and budding yeast has been at the forefront in the discovery and dissection of these conserved mechanisms. Topics covered include upstream activation sequence and promoter structure, transcription factor classification, and examples of regulated transcription factor activity. We also examine advances in understanding the RNA polymerase II transcription machinery, conserved coactivator complexes, transcription activation domains, and the cooperation of these factors in gene regulatory mechanisms.

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Year:  2011        PMID: 22084422      PMCID: PMC3213380          DOI: 10.1534/genetics.111.127019

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  436 in total

1.  Gene activation by dissociation of an inhibitor from a transcriptional activation domain.

Authors:  Fenglei Jiang; Benjamin R Frey; Margery L Evans; Jordan C Friel; James E Hopper
Journal:  Mol Cell Biol       Date:  2009-08-03       Impact factor: 4.272

2.  Distinguishing direct versus indirect transcription factor-DNA interactions.

Authors:  Raluca Gordân; Alexander J Hartemink; Martha L Bulyk
Journal:  Genome Res       Date:  2009-08-03       Impact factor: 9.043

Review 3.  Pervasive transcription constitutes a new level of eukaryotic genome regulation.

Authors:  Julia Berretta; Antonin Morillon
Journal:  EMBO Rep       Date:  2009-08-14       Impact factor: 8.807

Review 4.  The logic of chromatin architecture and remodelling at promoters.

Authors:  Bradley R Cairns
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

5.  RNA polymerase II-TFIIB structure and mechanism of transcription initiation.

Authors:  Dirk Kostrewa; Mirijam E Zeller; Karim-Jean Armache; Martin Seizl; Kristin Leike; Michael Thomm; Patrick Cramer
Journal:  Nature       Date:  2009-11-19       Impact factor: 49.962

Review 6.  Divergent transcription: a new feature of active promoters.

Authors:  Amy C Seila; Leighton J Core; John T Lis; Phillip A Sharp
Journal:  Cell Cycle       Date:  2009-08-19       Impact factor: 4.534

7.  Snf1 controls the activity of adr1 through dephosphorylation of Ser230.

Authors:  Sooraj Ratnakumar; Nataly Kacherovsky; Erin Arms; Elton T Young
Journal:  Genetics       Date:  2009-04-27       Impact factor: 4.562

8.  A high-resolution interaction map of three transcriptional activation domains with a key coactivator from photo-cross-linking and multiplexed mass spectrometry.

Authors:  Chinmay Y Majmudar; Bo Wang; Jenifer K Lum; Kristina Håkansson; Anna K Mapp
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

9.  Phosphorylation of the transcription elongation factor Spt5 by yeast Bur1 kinase stimulates recruitment of the PAF complex.

Authors:  Ying Liu; Linda Warfield; Chao Zhang; Jie Luo; Jasmina Allen; Walter H Lang; Jeffrey Ranish; Kevan M Shokat; Steven Hahn
Journal:  Mol Cell Biol       Date:  2009-07-06       Impact factor: 4.272

Review 10.  Defining mechanisms that regulate RNA polymerase II transcription in vivo.

Authors:  Nicholas J Fuda; M Behfar Ardehali; John T Lis
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

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  140 in total

Review 1.  Molecular and evolutionary processes generating variation in gene expression.

Authors:  Mark S Hill; Pétra Vande Zande; Patricia J Wittkopp
Journal:  Nat Rev Genet       Date:  2020-12-02       Impact factor: 53.242

Review 2.  Synthetic Promoters: Designing the cis Regulatory Modules for Controlled Gene Expression.

Authors:  Jameel Aysha; Muhammad Noman; Fawei Wang; Weican Liu; Yonggang Zhou; Haiyan Li; Xiaowei Li
Journal:  Mol Biotechnol       Date:  2018-08       Impact factor: 2.695

3.  Identification of a transcriptional activation domain in yeast repressor activator protein 1 (Rap1) using an altered DNA-binding specificity variant.

Authors:  Amanda N Johnson; P Anthony Weil
Journal:  J Biol Chem       Date:  2017-02-14       Impact factor: 5.157

4.  Fungal mediator tail subunits contain classical transcriptional activation domains.

Authors:  Zhongle Liu; Lawrence C Myers
Journal:  Mol Cell Biol       Date:  2015-02-02       Impact factor: 4.272

Review 5.  Structural insights into transcription initiation by RNA polymerase II.

Authors:  Sebastian Grünberg; Steven Hahn
Journal:  Trends Biochem Sci       Date:  2013-10-11       Impact factor: 13.807

Review 6.  Sub1/PC4, a multifaceted factor: from transcription to genome stability.

Authors:  Miguel Garavís; Olga Calvo
Journal:  Curr Genet       Date:  2017-05-31       Impact factor: 3.886

7.  The TAF9 C-terminal conserved region domain is required for SAGA and TFIID promoter occupancy to promote transcriptional activation.

Authors:  Malika Saint; Sonal Sawhney; Ishani Sinha; Rana Pratap Singh; Rashmi Dahiya; Anushikha Thakur; Rahul Siddharthan; Krishnamurthy Natarajan
Journal:  Mol Cell Biol       Date:  2014-02-18       Impact factor: 4.272

8.  Zinc-dependent regulation of the Adh1 antisense transcript in fission yeast.

Authors:  Kate M Ehrensberger; Carter Mason; Mark E Corkins; Cole Anderson; Natalie Dutrow; Bradley R Cairns; Brian Dalley; Brett Milash; Amanda J Bird
Journal:  J Biol Chem       Date:  2012-12-05       Impact factor: 5.157

9.  Analysis of promoter function in Aspergillus fumigatus.

Authors:  Sanjoy Paul; J Stacey Klutts; W Scott Moye-Rowley
Journal:  Eukaryot Cell       Date:  2012-07-27

10.  Different Mechanisms Confer Gradual Control and Memory at Nutrient- and Stress-Regulated Genes in Yeast.

Authors:  Alessandro Rienzo; Daniel Poveda-Huertes; Selcan Aydin; Nicolas E Buchler; Amparo Pascual-Ahuir; Markus Proft
Journal:  Mol Cell Biol       Date:  2015-08-17       Impact factor: 4.272

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