Literature DB >> 23870664

Dancing the cell cycle two-step: regulation of yeast G1-cell-cycle genes by chromatin structure.

David J Stillman1.   

Abstract

The chromatin structure at a promoter can define how a gene is regulated. Studies of two yeast genes expressed in the G1 phase of the cell cycle, HO and CLN2, have provided important paradigms for transcriptional regulation. Although the SBF (Swi4/Swi6 box factor) transcription factor activates both genes, the chromatin landscapes that regulate SBF binding are different. Specifically, the CLN2 promoter is constitutively available for SBF binding, whereas HO has a complex two-step promoter in which chromatin changes in one region allow SBF to bind at a downstream location. These studies reveal the role of chromatin in defining the regulatory properties of promoters. 2013 Elsevier Ltd. All rights reserved

Entities:  

Keywords:  cell cycle; chromatin; gene activation; promoter

Mesh：

Substances：

Year:  2013        PMID： 23870664      PMCID： PMC3771362          DOI： 10.1016/j.tibs.2013.06.009

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN： 0968-0004            Impact factor:   13.807


  51 in total

1.  Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5.

Authors:  Robertus A M de Bruin; W Hayes McDonald; Tatyana I Kalashnikova; John Yates; Curt Wittenberg
Journal:  Cell       Date:  2004-06-25       Impact factor: 41.582

2.  SCFCdc4 enables mating type switching in yeast by cyclin-dependent kinase-mediated elimination of the Ash1 transcriptional repressor.

Authors:  Qingquan Liu; Brett Larsen; Marketa Ricicova; Stephen Orlicky; Hille Tekotte; Xiaojing Tang; Karen Craig; Adam Quiring; Thierry Le Bihan; Carl Hansen; Frank Sicheri; Mike Tyers
Journal:  Mol Cell Biol       Date:  2010-11-22       Impact factor: 4.272

3.  Stochastic expression and epigenetic memory at the yeast HO promoter.

Authors:  Qian Zhang; Youngdae Yoon; Yaxin Yu; Emily J Parnell; Juan Antonio Raygoza Garay; Michael M Mwangi; Frederick R Cross; David J Stillman; Lu Bai
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-08       Impact factor: 11.205

4.  Repression of the yeast HO gene by the MATalpha2 and MATa1 homeodomain proteins.

Authors:  Jonathan R Mathias; Sean E Hanlon; Ruadhan A O'Flanagan; Anirvan M Sengupta; Andrew K Vershon
Journal:  Nucleic Acids Res       Date:  2004-12-14       Impact factor: 16.971

5.  G1 transcription factors are differentially regulated in Saccharomyces cerevisiae by the Swi6-binding protein Stb1.

Authors:  Michael Costanzo; Oliver Schub; Brenda Andrews
Journal:  Mol Cell Biol       Date:  2003-07       Impact factor: 4.272

6.  Forkhead proteins control the outcome of transcription factor binding by antiactivation.

Authors:  Warren P Voth; Yaxin Yu; Shinya Takahata; Kelsi L Kretschmann; Jason D Lieb; Rebecca L Parker; Brett Milash; David J Stillman
Journal:  EMBO J       Date:  2007-09-27       Impact factor: 11.598

7.  Stb1 collaborates with other regulators to modulate the G1-specific transcriptional circuit.

Authors:  Robertus A M de Bruin; Tatyana I Kalashnikova; Curt Wittenberg
Journal:  Mol Cell Biol       Date:  2008-09-15       Impact factor: 4.272

8.  Positive feedback of G1 cyclins ensures coherent cell cycle entry.

Authors:  Jan M Skotheim; Stefano Di Talia; Eric D Siggia; Frederick R Cross
Journal:  Nature       Date:  2008-07-17       Impact factor: 49.962

9.  A map of nucleosome positions in yeast at base-pair resolution.

Authors:  Kristin Brogaard; Liqun Xi; Ji-Ping Wang; Jonathan Widom
Journal:  Nature       Date:  2012-06-28       Impact factor: 49.962

10.  Binding specificity of the G1/S transcriptional regulators in budding yeast.

Authors:  Michael R Harris; Dave Lee; Sarah Farmer; Noel F Lowndes; Robertus A M de Bruin
Journal:  PLoS One       Date:  2013-04-04       Impact factor: 3.240
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  18 in total

1.  A Role for Mediator Core in Limiting Coactivator Recruitment in Saccharomyces cerevisiae.

Authors:  Robert M Yarrington; Yaxin Yu; Chao Yan; Lu Bai; David J Stillman
Journal:  Genetics       Date:  2020-04-23       Impact factor: 4.562

Review 2.  Topology and control of the cell-cycle-regulated transcriptional circuitry.

Authors:  Steven B Haase; Curt Wittenberg
Journal:  Genetics       Date:  2014-01       Impact factor: 4.562

3.  The transcription factor Swi4 is target for PKA regulation of cell size at the G1 to S transition in Saccharomyces cerevisiae.

Authors:  Loredana Amigoni; Sonia Colombo; Fiorella Belotti; Lilia Alberghina; Enzo Martegani
Journal:  Cell Cycle       Date:  2015-06-05       Impact factor: 4.534

4.  Spatiotemporal cascade of transcription factor binding required for promoter activation.

Authors:  Robert M Yarrington; Jared S Rudd; David J Stillman
Journal:  Mol Cell Biol       Date:  2014-12-15       Impact factor: 4.272

5.  Multiple Negative Regulators Restrict Recruitment of the SWI/SNF Chromatin Remodeler to the HO Promoter in Saccharomyces cerevisiae.

Authors:  Emily J Parnell; David J Stillman
Journal:  Genetics       Date:  2019-06-05       Impact factor: 4.562

6.  Disruption of promoter memory by synthesis of a long noncoding RNA.

Authors:  Yaxin Yu; Robert M Yarrington; Edward B Chuong; Nels C Elde; David J Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-09       Impact factor: 11.205

7.  Nucleosomes Are Essential for Proper Regulation of a Multigated Promoter in Saccharomyces cerevisiae.

Authors:  Robert M Yarrington; Jenna M Goodrum; David J Stillman
Journal:  Genetics       Date:  2015-12-01       Impact factor: 4.562

8.  The Rts1 regulatory subunit of PP2A phosphatase controls expression of the HO endonuclease via localization of the Ace2 transcription factor.

Authors:  Emily J Parnell; Yaxin Yu; Rafael Lucena; Youngdae Yoon; Lu Bai; Douglas R Kellogg; David J Stillman
Journal:  J Biol Chem       Date:  2014-10-28       Impact factor: 5.157

9.  Genetic analysis argues for a coactivator function for the Saccharomyces cerevisiae Tup1 corepressor.

Authors:  Emily J Parnell; Timothy J Parnell; David J Stillman
Journal:  Genetics       Date:  2021-10-02       Impact factor: 4.402

Review 10.  An Evolutionary Perspective on Yeast Mating-Type Switching.

Authors:  Sara J Hanson; Kenneth H Wolfe
Journal:  Genetics       Date:  2017-05       Impact factor: 4.562
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