Literature DB >> 18802787

An olfactory receptor pseudogene whose function emerged in humans: a case study in the evolution of structure-function in GPCRs.

Peter C Lai1, Gautam Bahl, Maryse Gremigni, Valery Matarazzo, Olivier Clot-Faybesse, Catherine Ronin, Chiquito J Crasto.   

Abstract

Human olfactory receptor, hOR17-210, is identified as a pseudogene in the human genome. Experimental data has shown however, that the gene product of frame-shifted, cloned hOR17-210 cDNA was able to bind an odorant-binding protein and is narrowly tuned for excitation by cyclic ketones. Supported by experimental results, we used the bioinformatics methods of sequence analysis (genome-wide and pair-wise), computational protein modeling and docking, to show that functionality in this receptor is retained due to sequence-structure features not previously observed in mammalian ORs. This receptor does not possess the first two transmembrane helical domains (of seven typically seen in GPCRs). It however, possesses an additional TM that has not been observed in other human olfactory receptors. By incorporating these novel structural features, we created two putative models for this receptor. We also docked odor ligands that were experimentally shown to bind hOR17-210. We show how and why structural modifications of OR17-210 do not hinder this receptor's functionality. Our studies reveal that novel gene rearrangements that result in sequence and structural diversity may have a bearing on OR and GPCR function and evolution.

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Year:  2008        PMID: 18802787      PMCID: PMC3197733          DOI: 10.1007/s10969-008-9043-x

Source DB:  PubMed          Journal:  J Struct Funct Genomics        ISSN: 1345-711X


  61 in total

1.  Predicted 3-D structures for mouse I7 and rat I7 olfactory receptors and comparison of predicted odor recognition profiles with experiment.

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Journal:  Chem Senses       Date:  2004-09       Impact factor: 3.160

Review 2.  Odorant receptor gene choice in olfactory sensory neurons: the one receptor-one neuron hypothesis revisited.

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Journal:  Curr Opin Neurobiol       Date:  2004-02       Impact factor: 6.627

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Journal:  J Comput Aided Mol Des       Date:  1996-04       Impact factor: 3.686

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7.  Molecular modeling of ligand-receptor interactions in the OR5 olfactory receptor.

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Journal:  Neuroreport       Date:  1994-06-02       Impact factor: 1.837

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Authors:  Sayako Katada; Kazushige Touhara
Journal:  Nihon Yakurigaku Zasshi       Date:  2004-10

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Journal:  Comp Biochem Physiol B       Date:  1988

10.  Predicted 3D structure for the human beta 2 adrenergic receptor and its binding site for agonists and antagonists.

Authors:  Peter L Freddolino; M Yashar S Kalani; Nagarajan Vaidehi; Wely B Floriano; Spencer E Hall; Rene J Trabanino; Victor Wai Tak Kam; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-23       Impact factor: 11.205

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  10 in total

1.  Pseudogene: lessons from PCR bias, identification and resurrection.

Authors:  Shan-Min Chen; Ka-Yan Ma; Jin Zeng
Journal:  Mol Biol Rep       Date:  2010-11-30       Impact factor: 2.316

2.  Origination and Function of Plant Pseudogenes.

Authors:  Jianbo Xie; Sisi Chen; Weijie Xu; Yiyang Zhao; Deqiang Zhang
Journal:  Plant Signal Behav       Date:  2019-06-04

3.  Computational Biology of Olfactory Receptors.

Authors:  Chiquito J Crasto
Journal:  Curr Bioinform       Date:  2009-01       Impact factor: 3.543

4.  Hydrophobicity profiles in G protein-coupled receptor transmembrane helical domains.

Authors:  Chiquito J Crasto
Journal:  J Receptor Ligand Channel Res       Date:  2010

5.  Odor detection by humans of lineal aliphatic aldehydes and helional as gauged by dose-response functions.

Authors:  J Enrique Cometto-Muñiz; Michael H Abraham
Journal:  Chem Senses       Date:  2010-02-26       Impact factor: 3.160

6.  Databases in SenseLab for the genomics, proteomics, and function of olfactory receptors.

Authors:  Luis N Marenco; Gautam Bahl; Lorra Hyland; Jing Shi; Rixin Wang; Peter C Lai; Perry L Miller; Gordon M Shepherd; Chiquito J Crasto
Journal:  Methods Mol Biol       Date:  2013

7.  Olfactory psychometric functions for homologous 2-ketones.

Authors:  J Enrique Cometto-Muñiz; Michael H Abraham
Journal:  Behav Brain Res       Date:  2009-02-21       Impact factor: 3.332

8.  Deep sequencing of the murine olfactory receptor neuron transcriptome.

Authors:  Ninthujah Kanageswaran; Marilen Demond; Maximilian Nagel; Benjamin S P Schreiner; Sabrina Baumgart; Paul Scholz; Janine Altmüller; Christian Becker; Julia F Doerner; Heike Conrad; Sonja Oberland; Christian H Wetzel; Eva M Neuhaus; Hanns Hatt; Günter Gisselmann
Journal:  PLoS One       Date:  2015-01-15       Impact factor: 3.240

9.  DOR - a Database of Olfactory Receptors - Integrated Repository for Sequence and Secondary Structural Information of Olfactory Receptors in Selected Eukaryotic Genomes.

Authors:  Balasubramanian Nagarathnam; Snehal D Karpe; Krishnan Harini; Kannan Sankar; Mohammed Iftekhar; Durairaj Rajesh; Sadasivam Giji; Govidaraju Archunan; Veluchamy Balakrishnan; M Michael Gromiha; Wataru Nemoto; Kazhuhiko Fukui; Ramanathan Sowdhamini
Journal:  Bioinform Biol Insights       Date:  2014-06-12

Review 10.  The state of the art of odorant receptor deorphanization: a report from the orphanage.

Authors:  Zita Peterlin; Stuart Firestein; Matthew E Rogers
Journal:  J Gen Physiol       Date:  2014-04-14       Impact factor: 4.086

  10 in total

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