Literature DB >> 23585030

Databases in SenseLab for the genomics, proteomics, and function of olfactory receptors.

Luis N Marenco1, Gautam Bahl, Lorra Hyland, Jing Shi, Rixin Wang, Peter C Lai, Perry L Miller, Gordon M Shepherd, Chiquito J Crasto.   

Abstract

We present here, the salient aspects of three databases: Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of ORs; OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory rectors; and OdorModelDB disseminates information related to computational models of olfactory receptors (ORs). The data stored among these databases is integrated. Presented in this chapter are descriptions of these resources, which are part of the SenseLab suite of databases, a discussion of the computational infrastructure that enhances the efficacy of information storage, retrieval, dissemination, and automated data population from external sources.

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Year:  2013        PMID: 23585030      PMCID: PMC4465568          DOI: 10.1007/978-1-62703-377-0_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  62 in total

1.  The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure.

Authors:  Tetsuji Okada; Minoru Sugihara; Ana-Nicoleta Bondar; Marcus Elstner; Peter Entel; Volker Buss
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

2.  An odorant derivative as an antagonist for an olfactory receptor.

Authors:  Yuki Oka; Akio Nakamura; Hidenori Watanabe; Kazushige Touhara
Journal:  Chem Senses       Date:  2004-11       Impact factor: 3.160

3.  Molecular determinants of ligand selectivity in a vertebrate odorant receptor.

Authors:  Percy Luu; Francine Acher; Hugues-Olivier Bertrand; Jinhong Fan; John Ngai
Journal:  J Neurosci       Date:  2004-11-10       Impact factor: 6.167

4.  Love at first smell--the 2004 Nobel Prize in Physiology or Medicine.

Authors:  Peter Mombaerts
Journal:  N Engl J Med       Date:  2004-12-16       Impact factor: 91.245

Review 5.  Deorphanizing vertebrate olfactory receptors: recent advances in odorant-response assays.

Authors:  Kazushige Touhara
Journal:  Neurochem Int       Date:  2007-06-13       Impact factor: 3.921

6.  GABA uptake-dependent Ca(2+) signaling in developing olfactory bulb astrocytes.

Authors:  Michael Doengi; Daniela Hirnet; Philippe Coulon; Hans-Christian Pape; Joachim W Deitmer; Christian Lohr
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-30       Impact factor: 11.205

7.  Functional expression of a mammalian odorant receptor.

Authors:  H Zhao; L Ivic; J M Otaki; M Hashimoto; K Mikoshiba; S Firestein
Journal:  Science       Date:  1998-01-09       Impact factor: 47.728

8.  Test of the Binding Threshold Hypothesis for olfactory receptors: explanation of the differential binding of ketones to the mouse and human orthologs of olfactory receptor 912-93.

Authors:  Patrick Hummel; Nagarajan Vaidehi; Wely B Floriano; Spencer E Hall; William A Goddard
Journal:  Protein Sci       Date:  2005-03       Impact factor: 6.725

9.  A comparison of the human and chimpanzee olfactory receptor gene repertoires.

Authors:  Yoav Gilad; Orna Man; Gustavo Glusman
Journal:  Genome Res       Date:  2005-02       Impact factor: 9.043

Review 10.  Recording of the human electro-olfactogram.

Authors:  M Knecht; T Hummel
Journal:  Physiol Behav       Date:  2004-10-30
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  3 in total

1.  Using a community-engaged health informatics approach to develop a web analytics research platform for sharing data with community stakeholders.

Authors:  Karen H Wang; Luis Marenco; Johanna Elumn Madera; Jenerius A Aminawung; Emily A Wang; Kei-Hoi Cheung
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

2.  ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions.

Authors:  Luis Marenco; Rixin Wang; Robert McDougal; Tsviya Olender; Michal Twik; Elspeth Bruford; Xinyi Liu; Jian Zhang; Doron Lancet; Gordon Shepherd; Chiquito Crasto
Journal:  Database (Oxford)       Date:  2016-10-02       Impact factor: 3.451

3.  Bitter Taste and Olfactory Receptors: Beyond Chemical Sensing in the Tongue and the Nose.

Authors:  Mercedes Alfonso-Prieto
Journal:  J Membr Biol       Date:  2021-06-25       Impact factor: 1.843

  3 in total

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