Literature DB >> 15494002

X-ray crystallographic studies for ligand-protein interaction changes in rhodopsin.

T Okada1.   

Abstract

G-protein-coupled receptors constitute the largest transmembrane receptor family in human. They are generally activated on binding their specific ligands at the extracellular side of membranes. The signal carried by an agonist is then transmitted to the intracellular side through a conformational change of the receptor, which becomes competent to catalyse GDP/GTP exchange in the alpha-subunit of heterotrimeric G-protein. Since most of the G-protein-coupled receptors (rhodopsin-like subfamily) share a set of conserved amino acid residues in the transmembrane domain, it is probable that the ligand-triggered activation process involves a common mechanism of rearrangement of the hepta-helical transmembrane bundle. For understanding the nature of this event that is not yet characterized sufficiently, X-ray crystallographic studies of rhodopsin with or without light stimulation can provide valuable information. In rhodopsin, the initial cis-trans photoisomerization of retinal chromophore triggers the structural changes of transmembrane helices. This activation process has been characterized with some spectroscopically distinct photoreaction intermediates (batho, lumi, Meta I and Meta II). With recent advances in the conditions for crystallographic experiments, the diffraction limit of the rhodopsin crystals has been substantially extended. As a result, it becomes possible to detect small structural changes evoked after photoactivation under cryogenic conditions.

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Year:  2004        PMID: 15494002     DOI: 10.1042/BST0320738

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  7 in total

1.  How a small change in retinal leads to G-protein activation: initial events suggested by molecular dynamics calculations.

Authors:  Paul S Crozier; Mark J Stevens; Thomas B Woolf
Journal:  Proteins       Date:  2007-02-15

2.  Engineering a G protein-coupled receptor for structural studies: stabilization of the BLT1 receptor ground state.

Authors:  Aimée Martin; Marjorie Damian; Michel Laguerre; Joseph Parello; Bernard Pucci; Laurence Serre; Sophie Mary; Jacky Marie; Jean-Louis Banères
Journal:  Protein Sci       Date:  2009-04       Impact factor: 6.725

3.  An olfactory receptor pseudogene whose function emerged in humans: a case study in the evolution of structure-function in GPCRs.

Authors:  Peter C Lai; Gautam Bahl; Maryse Gremigni; Valery Matarazzo; Olivier Clot-Faybesse; Catherine Ronin; Chiquito J Crasto
Journal:  J Struct Funct Genomics       Date:  2008-09-19

4.  Computational Biology of Olfactory Receptors.

Authors:  Chiquito J Crasto
Journal:  Curr Bioinform       Date:  2009-01       Impact factor: 3.543

5.  Internal hydration increases during activation of the G-protein-coupled receptor rhodopsin.

Authors:  Alan Grossfield; Michael C Pitman; Scott E Feller; Olivier Soubias; Klaus Gawrisch
Journal:  J Mol Biol       Date:  2008-05-22       Impact factor: 5.469

6.  Conformational dynamics of activation for the pentameric complex of dimeric G protein-coupled receptor and heterotrimeric G protein.

Authors:  Tivadar Orban; Beata Jastrzebska; Sayan Gupta; Benlian Wang; Masaru Miyagi; Mark R Chance; Krzysztof Palczewski
Journal:  Structure       Date:  2012-05-09       Impact factor: 5.006

Review 7.  Inactive and active states and supramolecular organization of GPCRs: insights from computational modeling.

Authors:  Francesca Fanelli; Pier G De Benedetti
Journal:  J Comput Aided Mol Des       Date:  2006-09-29       Impact factor: 4.179

  7 in total

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