Literature DB >> 31161861

Origination and Function of Plant Pseudogenes.

Jianbo Xie1,2, Sisi Chen1,2, Weijie Xu1,2, Yiyang Zhao1,2, Deqiang Zhang1,2.   

Abstract

Pseudogenes, nonfunctional genomic sequences derived from functional protein-coding genes, form by duplication or retrotransposition, and loss of gene function by disabling mutations. Studies on the evolution and functional aspects of plant pseudogenes are limited, despite their abundance in the plant genome. To date, most researches on pseudogenes focus on mammals. Here, we summarized current knowledge on pseudogenes including the historical and recent progress, analyzes their essential roles in gene regulation in hope of further stimulating researches in plant species for understanding gene regulation and evolution.

Keywords:  Pseudogene; evolution; function; noncoding RNAs; origin

Mesh:

Year:  2019        PMID: 31161861      PMCID: PMC6619919          DOI: 10.1080/15592324.2019.1625698

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  38 in total

1.  Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome.

Authors:  Zhaolei Zhang; Paul M Harrison; Yin Liu; Mark Gerstein
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

Review 2.  Comparative analysis of processed pseudogenes in the mouse and human genomes.

Authors:  Zhaolei Zhang; Nick Carriero; Mark Gerstein
Journal:  Trends Genet       Date:  2004-02       Impact factor: 11.639

3.  Small RNAs: Pseudogenes act as microRNA decoys.

Authors:  Meera Swami
Journal:  Nat Rev Cancer       Date:  2010-08       Impact factor: 60.716

4.  Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes.

Authors:  Oliver H Tam; Alexei A Aravin; Paula Stein; Angelique Girard; Elizabeth P Murchison; Sihem Cheloufi; Emily Hodges; Martin Anger; Ravi Sachidanandam; Richard M Schultz; Gregory J Hannon
Journal:  Nature       Date:  2008-04-10       Impact factor: 49.962

5.  The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo.

Authors:  Florian A Karreth; Markus Reschke; Anna Ruocco; Christopher Ng; Bjoern Chapuy; Valentine Léopold; Marcela Sjoberg; Thomas M Keane; Akanksha Verma; Ugo Ala; Yvonne Tay; David Wu; Nina Seitzer; Martin Del Castillo Velasco-Herrera; Anne Bothmer; Jacqueline Fung; Fernanda Langellotto; Scott J Rodig; Olivier Elemento; Margaret A Shipp; David J Adams; Roberto Chiarle; Pier Paolo Pandolfi
Journal:  Cell       Date:  2015-04-02       Impact factor: 41.582

6.  Segmental duplications in the human genome reveal details of pseudogene formation.

Authors:  Ekta Khurana; Hugo Y K Lam; Chao Cheng; Nicholas Carriero; Philip Cayting; Mark B Gerstein
Journal:  Nucleic Acids Res       Date:  2010-07-08       Impact factor: 16.971

7.  Automatic annotation of eukaryotic genes, pseudogenes and promoters.

Authors:  Victor Solovyev; Peter Kosarev; Igor Seledsov; Denis Vorobyev
Journal:  Genome Biol       Date:  2006-08-07       Impact factor: 13.583

8.  Whole genome duplication events in plant evolution reconstructed and predicted using myosin motor proteins.

Authors:  Stefanie Mühlhausen; Martin Kollmar
Journal:  BMC Evol Biol       Date:  2013-09-22       Impact factor: 3.260

9.  Pseudogene-derived lncRNAs: emerging regulators of gene expression.

Authors:  Michael J Milligan; Leonard Lipovich
Journal:  Front Genet       Date:  2015-02-04       Impact factor: 4.599

10.  Identification and characterization of pseudogenes in the rice gene complement.

Authors:  Françoise Thibaud-Nissen; Shu Ouyang; C Robin Buell
Journal:  BMC Genomics       Date:  2009-07-16       Impact factor: 3.969

View more
  3 in total

1.  Comparative Analysis of the Complete Chloroplast Genome of Mainland Aster spathulifolius and Other Aster Species.

Authors:  Swati Tyagi; Jae-A Jung; Jung Sun Kim; So Youn Won
Journal:  Plants (Basel)       Date:  2020-04-29

Review 2.  Pseudogenes in Cardiovascular Disease.

Authors:  Yanyan Qi; Xi Wang; Wenbo Li; Dongchang Chen; Hua Meng; Songtao An
Journal:  Front Mol Biosci       Date:  2021-02-10

3.  Genome-Wide Identification and Expression Analysis of SNARE Genes in Brassica napus.

Authors:  Jing Xu; Xu Zhao; Jiandong Bao; Yanan Shan; Mengjiao Zhang; Yanan Shen; Yakubu Saddeeq Abubakar; Guodong Lu; Zonghua Wang; Airong Wang
Journal:  Plants (Basel)       Date:  2022-03-07
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.