Literature DB >> 18771735

Radiation dose reduction and image enhancement in biological imaging through equally-sloped tomography.

Edwin Lee1, Benjamin P Fahimian, Cristina V Iancu, Christian Suloway, Gavin E Murphy, Elizabeth R Wright, Daniel Castaño-Díez, Grant J Jensen, Jianwei Miao.   

Abstract

Electron tomography is currently the highest resolution imaging modality available to study the 3D structures of pleomorphic macromolecular assemblies, viruses, organelles and cells. Unfortunately, the resolution is currently limited to 3-5nm by several factors including the dose tolerance of biological specimens and the inaccessibility of certain tilt angles. Here we report the first experimental demonstration of equally-sloped tomography (EST) to alleviate these problems. As a proof of principle, we applied EST to reconstructing frozen-hydrated keyhole limpet hemocyanin molecules from a tilt-series taken with constant slope increments. In comparison with weighted back-projection (WBP), the algebraic reconstruction technique (ART) and the simultaneous algebraic reconstruction technique (SART), EST reconstructions exhibited higher contrast, less peripheral noise, more easily detectable molecular boundaries and reduced missing wedge effects. More importantly, EST reconstructions including only two-thirds the original images appeared to have the same resolution as full WBP reconstructions, suggesting that EST can either reduce the dose required to reach a given resolution or allow higher resolutions to be achieved with a given dose. EST was also applied to reconstructing a frozen-hydrated bacterial cell from a tilt-series taken with constant angular increments. The results confirmed similar benefits when standard tilts are utilized.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18771735      PMCID: PMC3099251          DOI: 10.1016/j.jsb.2008.07.011

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  21 in total

1.  Biological imaging by soft x-ray diffraction microscopy.

Authors:  David Shapiro; Pierre Thibault; Tobias Beetz; Veit Elser; Malcolm Howells; Chris Jacobsen; Janos Kirz; Enju Lima; Huijie Miao; Aaron M Neiman; David Sayre
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-11       Impact factor: 11.205

Review 2.  Structural studies by electron tomography: from cells to molecules.

Authors:  Vladan Lucić; Friedrich Förster; Wolfgang Baumeister
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

3.  A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography.

Authors:  Cristina V Iancu; Elizabeth R Wright; J Bernard Heymann; Grant J Jensen
Journal:  J Struct Biol       Date:  2006-01-04       Impact factor: 2.867

4.  Implementation and performance evaluation of reconstruction algorithms on graphics processors.

Authors:  Daniel Castaño Díez; Hannes Mueller; Achilleas S Frangakis
Journal:  J Struct Biol       Date:  2006-09-01       Impact factor: 2.867

Review 5.  Computed tomography--an increasing source of radiation exposure.

Authors:  David J Brenner; Eric J Hall
Journal:  N Engl J Med       Date:  2007-11-29       Impact factor: 91.245

Review 6.  Extending X-ray crystallography to allow the imaging of noncrystalline materials, cells, and single protein complexes.

Authors:  Jianwei Miao; Tetsuya Ishikawa; Qun Shen; Thomas Earnest
Journal:  Annu Rev Phys Chem       Date:  2008       Impact factor: 12.703

7.  Dual-axis tomography: an approach with alignment methods that preserve resolution.

Authors:  D N Mastronarde
Journal:  J Struct Biol       Date:  1997-12       Impact factor: 2.867

8.  3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs).

Authors:  R Marabini; G T Herman; J M Carazo
Journal:  Ultramicroscopy       Date:  1998-04       Impact factor: 2.689

9.  Alternative reconstruction algorithm for NMR imaging.

Authors:  K W Leszczynski; P J Franaszczuk; P A Penczek
Journal:  Med Biol Eng Comput       Date:  1988-03       Impact factor: 2.602

Review 10.  The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules.

Authors:  R Henderson
Journal:  Q Rev Biophys       Date:  1995-05       Impact factor: 5.318

View more
  21 in total

1.  Electron tomography at 2.4-ångström resolution.

Authors:  M C Scott; Chien-Chun Chen; Matthew Mecklenburg; Chun Zhu; Rui Xu; Peter Ercius; Ulrich Dahmen; B C Regan; Jianwei Miao
Journal:  Nature       Date:  2012-03-21       Impact factor: 49.962

2.  Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy.

Authors:  Huaidong Jiang; Changyong Song; Chien-Chun Chen; Rui Xu; Kevin S Raines; Benjamin P Fahimian; Chien-Hung Lu; Ting-Kuo Lee; Akio Nakashima; Jun Urano; Tetsuya Ishikawa; Fuyuhiko Tamanoi; Jianwei Miao
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-04       Impact factor: 11.205

Review 3.  Electron cryotomography.

Authors:  Elitza I Tocheva; Zhuo Li; Grant J Jensen
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-05       Impact factor: 10.005

4.  Three-dimensional coordinates of individual atoms in materials revealed by electron tomography.

Authors:  Rui Xu; Chien-Chun Chen; Li Wu; M C Scott; W Theis; Colin Ophus; Matthias Bartels; Yongsoo Yang; Hadi Ramezani-Dakhel; Michael R Sawaya; Hendrik Heinz; Laurence D Marks; Peter Ercius; Jianwei Miao
Journal:  Nat Mater       Date:  2015-09-21       Impact factor: 43.841

5.  Miao et al. reply.

Authors:  Jianwei Miao; Chien-Chun Chen; Chun Zhu; M C Scott; Edward R White; Chin-Yi Chiu; B C Regan; Yu Huang; Laurence D Marks
Journal:  Nature       Date:  2013-11-21       Impact factor: 49.962

6.  X-ray-Based Techniques to Study the Nano-Bio Interface.

Authors:  Carlos Sanchez-Cano; Ramon A Alvarez-Puebla; John M Abendroth; Tobias Beck; Robert Blick; Yuan Cao; Frank Caruso; Indranath Chakraborty; Henry N Chapman; Chunying Chen; Bruce E Cohen; Andre L C Conceição; David P Cormode; Daxiang Cui; Kenneth A Dawson; Gerald Falkenberg; Chunhai Fan; Neus Feliu; Mingyuan Gao; Elisabetta Gargioni; Claus-C Glüer; Florian Grüner; Moustapha Hassan; Yong Hu; Yalan Huang; Samuel Huber; Nils Huse; Yanan Kang; Ali Khademhosseini; Thomas F Keller; Christian Körnig; Nicholas A Kotov; Dorota Koziej; Xing-Jie Liang; Beibei Liu; Sijin Liu; Yang Liu; Ziyao Liu; Luis M Liz-Marzán; Xiaowei Ma; Andres Machicote; Wolfgang Maison; Adrian P Mancuso; Saad Megahed; Bert Nickel; Ferdinand Otto; Cristina Palencia; Sakura Pascarelli; Arwen Pearson; Oula Peñate-Medina; Bing Qi; Joachim Rädler; Joseph J Richardson; Axel Rosenhahn; Kai Rothkamm; Michael Rübhausen; Milan K Sanyal; Raymond E Schaak; Heinz-Peter Schlemmer; Marius Schmidt; Oliver Schmutzler; Theo Schotten; Florian Schulz; A K Sood; Kathryn M Spiers; Theresa Staufer; Dominik M Stemer; Andreas Stierle; Xing Sun; Gohar Tsakanova; Paul S Weiss; Horst Weller; Fabian Westermeier; Ming Xu; Huijie Yan; Yuan Zeng; Ying Zhao; Yuliang Zhao; Dingcheng Zhu; Ying Zhu; Wolfgang J Parak
Journal:  ACS Nano       Date:  2021-03-02       Impact factor: 15.881

7.  Three-dimensional imaging of dislocations in a nanoparticle at atomic resolution.

Authors:  Chien-Chun Chen; Chun Zhu; Edward R White; Chin-Yi Chiu; M C Scott; B C Regan; Laurence D Marks; Yu Huang; Jianwei Miao
Journal:  Nature       Date:  2013-03-27       Impact factor: 49.962

8.  Techniques: 3D imaging of crystal defects.

Authors:  Patrick J McNally
Journal:  Nature       Date:  2013-03-27       Impact factor: 49.962

9.  Radiation dose reduction in medical x-ray CT via Fourier-based iterative reconstruction.

Authors:  Benjamin P Fahimian; Yunzhe Zhao; Zhifeng Huang; Russell Fung; Yu Mao; Chun Zhu; Maryam Khatonabadi; John J DeMarco; Stanley J Osher; Michael F McNitt-Gray; Jianwei Miao
Journal:  Med Phys       Date:  2013-03       Impact factor: 4.071

10.  High-resolution, low-dose phase contrast X-ray tomography for 3D diagnosis of human breast cancers.

Authors:  Yunzhe Zhao; Emmanuel Brun; Paola Coan; Zhifeng Huang; Aniko Sztrókay; Paul Claude Diemoz; Susanne Liebhardt; Alberto Mittone; Sergei Gasilov; Jianwei Miao; Alberto Bravin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.