Literature DB >> 9441937

Dual-axis tomography: an approach with alignment methods that preserve resolution.

D N Mastronarde1.   

Abstract

Tomographic reconstructions of biological specimens are now routinely being generated in our high voltage electron microscope by tilting the specimen around two orthogonal axes. Separate tomograms are computed from each tilt series. The two tomograms are aligned to each other with general 3-D linear transformations that can correct for distortions between the two tomograms, thus preserving the inherent resolution of the reconstruction throughout its volume. The 3-D Fourier transforms of the two tomograms are then selectively combined to achieve a single tomogram. Unlike a single-axis tomogram, a dual-axis tomogram shows good resolution for extended features at any orientation in the plane of the specimen; it also has improved resolution in the depth of the specimen. Calculations indicate that the improvements available from double tilting and from tilting to higher angles are largely additive. Actual and model data were used to assess whether varying the increment between tilted views in proportion to the cosine of the tilt angle would allow a reduction in the number of pictures required to achieve a given resolution of reconstruction. Analysis by Fourier sector correlation indicated that the variable tilt increment improved the reconstruction in some respects but degraded it in others. A varying tilt increment thus does not give an unqualified improvement, at least when using back-projection algorithms for the reconstruction.

Mesh:

Year:  1997        PMID: 9441937     DOI: 10.1006/jsbi.1997.3919

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  384 in total

1.  Organellar relationships in the Golgi region of the pancreatic beta cell line, HIT-T15, visualized by high resolution electron tomography.

Authors:  B J Marsh; D N Mastronarde; K F Buttle; K E Howell; J R McIntosh
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

2.  Using rapid freeze and freeze-substitution for the preparation of yeast cells for electron microscopy and three-dimensional analysis.

Authors:  T H Giddings; E T O'Toole; M Morphew; D N Mastronarde; J R McIntosh; M Winey
Journal:  Methods Cell Biol       Date:  2001       Impact factor: 1.441

3.  Three-dimensional analysis of syncytial-type cell plates during endosperm cellularization visualized by high resolution electron tomography.

Authors:  M S Otegui; D N Mastronarde; B H Kang; S Y Bednarek; L A Staehelin
Journal:  Plant Cell       Date:  2001-09       Impact factor: 11.277

4.  Structure of the Golgi and distribution of reporter molecules at 20 degrees C reveals the complexity of the exit compartments.

Authors:  Mark S Ladinsky; Christine C Wu; Shane McIntosh; J Richard McIntosh; Kathryn E Howell
Journal:  Mol Biol Cell       Date:  2002-08       Impact factor: 4.138

Review 5.  Electron tomography of yeast cells.

Authors:  Eileen T O'Toole; Mark Winey; J Richard McIntosh; David N Mastronarde
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

6.  Involvement of the endoplasmic reticulum in peroxisome formation.

Authors:  Hans J Geuze; Jean Luc Murk; An K Stroobants; Janice M Griffith; Monique J Kleijmeer; Abraham J Koster; Arie J Verkleij; Ben Distel; Henk F Tabak
Journal:  Mol Biol Cell       Date:  2003-04-04       Impact factor: 4.138

7.  Native ultrastructure of the red cell cytoskeleton by cryo-electron tomography.

Authors:  Andrea Nans; Narla Mohandas; David L Stokes
Journal:  Biophys J       Date:  2011-11-15       Impact factor: 4.033

8.  Ultrastructural study of plasmodesmata in the brown alga Dictyota dichotoma (Dictyotales, Phaeophyceae).

Authors:  Makoto Terauchi; Chikako Nagasato; Naoko Kajimura; Yoshinobu Mineyuki; Kazuo Okuda; Christos Katsaros; Taizo Motomura
Journal:  Planta       Date:  2012-05-01       Impact factor: 4.116

9.  Ultrastructural analysis of flagellar development in plurilocular sporangia of Ectocarpus siliculosus (Phaeophyceae).

Authors:  Gang Fu; Chikako Nagasato; Toshiaki Ito; Dieter G Müller; Taizo Motomura
Journal:  Protoplasma       Date:  2012-04-04       Impact factor: 3.356

10.  CD4+ T-cell synapses involve multiple distinct stages.

Authors:  Hironori Ueda; Mary K Morphew; J Richard McIntosh; Mark M Davis
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

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