Literature DB >> 20436476

Transient cold shock enhances zinc-finger nuclease-mediated gene disruption.

Yannick Doyon1, Vivian M Choi, Danny F Xia, Thuy D Vo, Philip D Gregory, Michael C Holmes.   

Abstract

Zinc-finger nucleases (ZFNs) are powerful tools for editing the genomes of cell lines and model organisms. Given the breadth of their potential application, simple methods that increase ZFN activity, thus ensuring genome modification, are highly attractive. Here we show that transient hypothermia generally and robustly increased the level of stable, ZFN-induced gene disruption, thereby providing a simple technique to enhance the experimental efficacy of ZFNs.

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Year:  2010        PMID: 20436476     DOI: 10.1038/nmeth.1456

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  15 in total

1.  Induction and repair of zinc-finger nuclease-targeted double-strand breaks in Caenorhabditis elegans somatic cells.

Authors:  Jason Morton; M Wayne Davis; Erik M Jorgensen; Dana Carroll
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

2.  An improved zinc-finger nuclease architecture for highly specific genome editing.

Authors:  Jeffrey C Miller; Michael C Holmes; Jianbin Wang; Dmitry Y Guschin; Ya-Li Lee; Igor Rupniewski; Christian M Beausejour; Adam J Waite; Nathaniel S Wang; Kenneth A Kim; Philip D Gregory; Carl O Pabo; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2007-07-01       Impact factor: 54.908

3.  Expanding or restricting the target site repertoire of zinc-finger nucleases: the inter-domain linker as a major determinant of target site selectivity.

Authors:  Eva-Maria Händel; Stephen Alwin; Toni Cathomen
Journal:  Mol Ther       Date:  2008-11-11       Impact factor: 11.454

4.  Efficient gene targeting in Drosophila with zinc-finger nucleases.

Authors:  Kelly Beumer; Gargi Bhattacharyya; Marina Bibikova; Jonathan K Trautman; Dana Carroll
Journal:  Genetics       Date:  2006-02-01       Impact factor: 4.562

5.  Biochemical insights into the mechanisms central to the response of mammalian cells to cold stress and subsequent rewarming.

Authors:  Anne Roobol; Martin J Carden; Ray J Newsam; C Mark Smales
Journal:  FEBS J       Date:  2008-11-28       Impact factor: 5.542

6.  Generation of knockout rats with X-linked severe combined immunodeficiency (X-SCID) using zinc-finger nucleases.

Authors:  Tomoji Mashimo; Akiko Takizawa; Birger Voigt; Kazuto Yoshimi; Hiroshi Hiai; Takashi Kuramoto; Tadao Serikawa
Journal:  PLoS One       Date:  2010-01-25       Impact factor: 3.240

7.  Knockout rats via embryo microinjection of zinc-finger nucleases.

Authors:  Aron M Geurts; Gregory J Cost; Yevgeniy Freyvert; Bryan Zeitler; Jeffrey C Miller; Vivian M Choi; Shirin S Jenkins; Adam Wood; Xiaoxia Cui; Xiangdong Meng; Anna Vincent; Stephen Lam; Mieczyslaw Michalkiewicz; Rebecca Schilling; Jamie Foeckler; Shawn Kalloway; Hartmut Weiler; Séverine Ménoret; Ignacio Anegon; Gregory D Davis; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Howard J Jacob; Roland Buelow
Journal:  Science       Date:  2009-07-24       Impact factor: 47.728

8.  Targeted gene knockout in mammalian cells by using engineered zinc-finger nucleases.

Authors:  Yolanda Santiago; Edmond Chan; Pei-Qi Liu; Salvatore Orlando; Lin Zhang; Fyodor D Urnov; Michael C Holmes; Dmitry Guschin; Adam Waite; Jeffrey C Miller; Edward J Rebar; Philip D Gregory; Aaron Klug; Trevor N Collingwood
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-21       Impact factor: 11.205

9.  Establishment of HIV-1 resistance in CD4+ T cells by genome editing using zinc-finger nucleases.

Authors:  Elena E Perez; Jianbin Wang; Jeffrey C Miller; Yann Jouvenot; Kenneth A Kim; Olga Liu; Nathaniel Wang; Gary Lee; Victor V Bartsevich; Ya-Li Lee; Dmitry Y Guschin; Igor Rupniewski; Adam J Waite; Carmine Carpenito; Richard G Carroll; Jordan S Orange; Fyodor D Urnov; Edward J Rebar; Dale Ando; Philip D Gregory; James L Riley; Michael C Holmes; Carl H June
Journal:  Nat Biotechnol       Date:  2008-06-29       Impact factor: 54.908

10.  Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.

Authors:  Yannick Doyon; Jasmine M McCammon; Jeffrey C Miller; Farhoud Faraji; Catherine Ngo; George E Katibah; Rainier Amora; Toby D Hocking; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Sharon L Amacher
Journal:  Nat Biotechnol       Date:  2008-05-25       Impact factor: 54.908

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  88 in total

1.  Zinc-finger nucleases: how to play two good hands.

Authors:  Mark Isalan
Journal:  Nat Methods       Date:  2011-12-28       Impact factor: 28.547

2.  Surrogate reporters for enrichment of cells with nuclease-induced mutations.

Authors:  Hyojin Kim; Eunji Um; Sung-Rae Cho; Chorong Jung; Hyongbum Kim; Jin-Soo Kim
Journal:  Nat Methods       Date:  2011-10-09       Impact factor: 28.547

3.  Genome editing with CompoZr custom zinc finger nucleases (ZFNs).

Authors:  Keith Hansen; Matthew J Coussens; Jack Sago; Shilpi Subramanian; Monika Gjoka; Dave Briner
Journal:  J Vis Exp       Date:  2012-06-14       Impact factor: 1.355

Review 4.  Genome editing with engineered zinc finger nucleases.

Authors:  Fyodor D Urnov; Edward J Rebar; Michael C Holmes; H Steve Zhang; Philip D Gregory
Journal:  Nat Rev Genet       Date:  2010-09       Impact factor: 53.242

5.  Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures.

Authors:  Yannick Doyon; Thuy D Vo; Matthew C Mendel; Shon G Greenberg; Jianbin Wang; Danny F Xia; Jeffrey C Miller; Fyodor D Urnov; Philip D Gregory; Michael C Holmes
Journal:  Nat Methods       Date:  2010-12-05       Impact factor: 28.547

6.  Efficient delivery of nuclease proteins for genome editing in human stem cells and primary cells.

Authors:  Jia Liu; Thomas Gaj; Yifeng Yang; Nan Wang; Sailan Shui; Sojung Kim; Chidananda Nagamangala Kanchiswamy; Jin-Soo Kim; Carlos F Barbas
Journal:  Nat Protoc       Date:  2015-10-22       Impact factor: 13.491

7.  Quantifying genome-editing outcomes at endogenous loci with SMRT sequencing.

Authors:  Ayal Hendel; Eric J Kildebeck; Eli J Fine; Joseph Clark; Niraj Punjya; Vittorio Sebastiano; Gang Bao; Matthew H Porteus
Journal:  Cell Rep       Date:  2014-03-27       Impact factor: 9.423

8.  Reduced human platelet uptake by pig livers deficient in the asialoglycoprotein receptor 1 protein.

Authors:  Leela L Paris; Jose L Estrada; Ping Li; Ross L Blankenship; Richard A Sidner; Luz M Reyes; Jessica B Montgomery; Christopher Burlak; James R Butler; Susan M Downey; Zheng-Yu Wang; Matthew Tector; A Joseph Tector
Journal:  Xenotransplantation       Date:  2015-02-27       Impact factor: 3.907

9.  A foundation for universal T-cell based immunotherapy: T cells engineered to express a CD19-specific chimeric-antigen-receptor and eliminate expression of endogenous TCR.

Authors:  Hiroki Torikai; Andreas Reik; Pei-Qi Liu; Yuanyue Zhou; Ling Zhang; Sourindra Maiti; Helen Huls; Jeffrey C Miller; Partow Kebriaei; Brian Rabinovich; Brian Rabinovitch; Dean A Lee; Richard E Champlin; Chiara Bonini; Luigi Naldini; Edward J Rebar; Philip D Gregory; Michael C Holmes; Laurence J N Cooper
Journal:  Blood       Date:  2012-04-24       Impact factor: 22.113

10.  TALENs targeting HBV: designer endonuclease therapies for viral infections.

Authors:  Nicholas D Weber; Daniel Stone; Keith R Jerome
Journal:  Mol Ther       Date:  2013-10       Impact factor: 11.454

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