Literature DB >> 12592413

Human zinc fingers as building blocks in the construction of artificial transcription factors.

Kwang-Hee Bae1, Young Do Kwon, Hyun-Chul Shin, Moon-Sun Hwang, Eun-Hyun Ryu, Kyung-Soon Park, Hyo-Young Yang, Dong-Ki Lee, Yangsoon Lee, Jinwoo Park, Heung Sun Kwon, Hyun-Won Kim, Byung-Il Yeh, Hyean-Woo Lee, Soon Hyung Sohn, Joonho Yoon, Wongi Seol, Jin-Soo Kim.   

Abstract

We describe methods for generating artificial transcription factors capable of up- or downregulating the expression of genes whose promoter regions contain the target DNA sequences. To accomplish this, we screened zinc fingers derived from sequences in the human genome and isolated 56 zinc fingers with diverse DNA-binding specificities. We used these zinc fingers as modular building blocks in the construction of novel, sequence-specific DNA-binding proteins. Fusion of these zinc-finger proteins with either a transcriptional activation or repression domain yielded potent transcriptional activators or repressors, respectively. These results show that the human genome encodes zinc fingers with diverse DNA-binding specificities and that these domains can be used to design sequence-specific DNA-binding proteins and artificial transcription factors.

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Year:  2003        PMID: 12592413     DOI: 10.1038/nbt796

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  76 in total

Review 1.  Therapeutic modulation of endogenous gene function by agents with designed DNA-sequence specificities.

Authors:  Taco G Uil; Hidde J Haisma; Marianne G Rots
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

2.  Toward a functional annotation of the human genome using artificial transcription factors.

Authors:  Dong-ki Lee; Jin Woo Park; Youn-Jae Kim; Jiwon Kim; Yangsoon Lee; Jeonglim Kim; Jin-Soo Kim
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

3.  Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection.

Authors:  Jessica A Hurt; Stacey A Thibodeau; Andrew S Hirsh; Carl O Pabo; J Keith Joung
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-03       Impact factor: 11.205

4.  Prediction of DNA-binding specificity in zinc finger proteins.

Authors:  Sumedha Roy; Shayoni Dutta; Kanika Khanna; Shruti Singla; Durai Sundar
Journal:  J Biosci       Date:  2012-07       Impact factor: 1.826

Review 5.  Genome editing with engineered zinc finger nucleases.

Authors:  Fyodor D Urnov; Edward J Rebar; Michael C Holmes; H Steve Zhang; Philip D Gregory
Journal:  Nat Rev Genet       Date:  2010-09       Impact factor: 53.242

6.  Specific Reactivation of Latent HIV-1 by dCas9-SunTag-VP64-mediated Guide RNA Targeting the HIV-1 Promoter.

Authors:  Haiyan Ji; Zhengtao Jiang; Panpan Lu; Li Ma; Chuan Li; Hanyu Pan; Zheng Fu; Xiying Qu; Pengfei Wang; Junxiao Deng; Xinyi Yang; Jianhua Wang; Huanzhang Zhu
Journal:  Mol Ther       Date:  2016-01-18       Impact factor: 11.454

7.  Phenotypic alteration and target gene identification using combinatorial libraries of zinc finger proteins in prokaryotic cells.

Authors:  Kyung-Soon Park; Young-Soon Jang; Horim Lee; Jin-Soo Kim
Journal:  J Bacteriol       Date:  2005-08       Impact factor: 3.490

8.  Correlation between functional and binding activities of designer zinc-finger proteins.

Authors:  Jong Seok Kang
Journal:  Biochem J       Date:  2007-04-01       Impact factor: 3.857

9.  Targeted mutagenesis in zebrafish using customized zinc-finger nucleases.

Authors:  Jonathan E Foley; Morgan L Maeder; Joseph Pearlberg; J Keith Joung; Randall T Peterson; Jing-Ruey J Yeh
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

10.  Max-E47, a designed minimalist protein that targets the E-box DNA site in vivo and in vitro.

Authors:  Jing Xu; Gang Chen; Antonia T De Jong; S Hesam Shahravan; Jumi A Shin
Journal:  J Am Chem Soc       Date:  2009-06-10       Impact factor: 15.419

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