Literature DB >> 19491935

An expanding arsenal of experimental methods yields an explosion of insights into protein folding mechanisms.

Alice I Bartlett1, Sheena E Radford.   

Abstract

In recent years, improvements in experimental techniques and enhancements in computing power have revolutionized our understanding of the mechanisms of protein folding. By combining insights gained from theory, experiment and simulation we are moving toward an atomistic view of folding landscapes. Future challenges involve exploiting the knowledge gained and methods developed to enable us to elucidate a molecular description of folding dynamics in the complex environment of the cell.

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Year:  2009        PMID: 19491935     DOI: 10.1038/nsmb.1592

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  106 in total

1.  Origin of unusual phi-values in protein folding: evidence against specific nucleation sites.

Authors:  Ignacio E Sánchez; Thomas Kiefhaber
Journal:  J Mol Biol       Date:  2003-12-12       Impact factor: 5.469

Review 2.  Protein folding and misfolding.

Authors:  Christopher M Dobson
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

3.  Random-coil behavior and the dimensions of chemically unfolded proteins.

Authors:  Jonathan E Kohn; Ian S Millett; Jaby Jacob; Bojan Zagrovic; Thomas M Dillon; Nikolina Cingel; Robin S Dothager; Soenke Seifert; P Thiyagarajan; Tobin R Sosnick; M Zahid Hasan; Vijay S Pande; Ingo Ruczinski; Sebastian Doniach; Kevin W Plaxco
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

4.  Solution structure of a protein denatured state and folding intermediate.

Authors:  T L Religa; J S Markson; U Mayor; S M V Freund; A R Fersht
Journal:  Nature       Date:  2005-10-13       Impact factor: 49.962

5.  Inhibition of protein aggregation in vitro and in vivo by a natural osmoprotectant.

Authors:  Zoya Ignatova; Lila M Gierasch
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-09       Impact factor: 11.205

Review 6.  Molecular simulation as an aid to experimentalists.

Authors:  Wilfred F van Gunsteren; Jozica Dolenc; Alan E Mark
Journal:  Curr Opin Struct Biol       Date:  2008-02-14       Impact factor: 6.809

7.  Small-angle X-ray scattering from RNA, proteins, and protein complexes.

Authors:  Jan Lipfert; Sebastian Doniach
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

Review 8.  Chaperone machines in action.

Authors:  Helen R Saibil
Journal:  Curr Opin Struct Biol       Date:  2008-02-01       Impact factor: 6.809

Review 9.  The protein folding problem.

Authors:  Ken A Dill; S Banu Ozkan; M Scott Shell; Thomas R Weikl
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

10.  Prolyl isomerization as a molecular timer in phage infection.

Authors:  Barbara Eckert; Andreas Martin; Jochen Balbach; Franz X Schmid
Journal:  Nat Struct Mol Biol       Date:  2005-06-05       Impact factor: 15.369

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  68 in total

1.  Stochastic simulation of structural properties of natively unfolded and denatured proteins.

Authors:  David Curcó; Catherine Michaux; Guillaume Roussel; Emmanuel Tinti; Eric A Perpète; Carlos Alemán
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

2.  Uncovering specific electrostatic interactions in the denatured states of proteins.

Authors:  Jana K Shen
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

Review 3.  Protein folding in the cytoplasm and the heat shock response.

Authors:  R Martin Vabulas; Swasti Raychaudhuri; Manajit Hayer-Hartl; F Ulrich Hartl
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-12       Impact factor: 10.005

4.  Denaturant-dependent folding of GFP.

Authors:  Govardhan Reddy; Zhenxing Liu; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-09       Impact factor: 11.205

5.  Conformation types of ubiquitin [M+8H]8+ Ions from water:methanol solutions: evidence for the N and A States in aqueous solution.

Authors:  Huilin Shi; Nicholas A Pierson; Stephen J Valentine; David E Clemmer
Journal:  J Phys Chem B       Date:  2012-03-02       Impact factor: 2.991

Review 6.  Converging concepts of protein folding in vitro and in vivo.

Authors:  F Ulrich Hartl; Manajit Hayer-Hartl
Journal:  Nat Struct Mol Biol       Date:  2009-06       Impact factor: 15.369

7.  Probing the origins of two-state folding.

Authors:  Thomas J Lane; Christian R Schwantes; Kyle A Beauchamp; Vijay S Pande
Journal:  J Chem Phys       Date:  2013-10-14       Impact factor: 3.488

8.  Solution dependence of the collisional activation of ubiquitin [M + 7H](7+) ions.

Authors:  Huilin Shi; Natalya Atlasevich; Samuel I Merenbloom; David E Clemmer
Journal:  J Am Soc Mass Spectrom       Date:  2014-12       Impact factor: 3.109

9.  Collapse kinetics and chevron plots from simulations of denaturant-dependent folding of globular proteins.

Authors:  Zhenxing Liu; Govardhan Reddy; Edward P O'Brien; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-21       Impact factor: 11.205

10.  Hsp90 Maintains Proteostasis of the Galactose Utilization Pathway To Prevent Cell Lethality.

Authors:  Rajaneesh Karimpurath Gopinath; Jun-Yi Leu
Journal:  Mol Cell Biol       Date:  2016-04-15       Impact factor: 4.272

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