Literature DB >> 15504030

Spectroscopic and functional characterization of T state hemoglobin conformations encapsulated in silica gels.

Uri Samuni1, David Dantsker, Laura J Juszczak, Stefano Bettati, Luca Ronda, Andrea Mozzarelli, Joel M Friedman.   

Abstract

Oxygen binding curves of sol-gel-encapsulated deoxy human adult hemoglobin (HbA) have previously revealed two distinct noncooperative populations with oxygen binding affinities approximately 1000 and 100 times lower than that of the high-affinity R state. The two populations which have been termed the low-affinity (LA) and high-affinity (HA) T states can be selectively stabilized using two different encapsulation protocols for deoxy-HbA. The present study seeks to understand the factors giving rise to these different affinity states. Visible and UV resonance Raman spectroscopies are used to characterize the conformational properties of both the deoxy and deoxy-turned-carbonmonoxy (CO) derivatives of HbA derived from the two encapsulation protocols. The geminate and bimolecular recombination of CO to the photodissociated CO derivatives is used to characterize the functional properties of the slowly evolving encapsulated populations. The results show that the initial deoxy-HbA populations are conformationally indistinguishable with respect to encapsulation protocol. The addition of CO to sol-gel-encapsulated deoxy-HbA triggers a detectable progression of conformational and functional changes. Visible resonance Raman spectra of the CO photoproduct reveal a progression of changes of the iron-proximal histidine stretching frequencies: 215, 222, 227, and 230 cm(-1). The low and high values correspond to the initial deoxy T state and liganded R (R(2)) state species, respectively. The 222 and 227 cm(-1) species are generated using encapsulation protocols that give rise to what are termed the LA and HA T states, respectively. The UV resonance Raman spectra of these and related species indicate that the progression from deoxy T to LA to HA is associated with a progressive loosening of T state constraints within the hinge and switch regions of the alpha(1)beta(2) interface. The time scale for the progression is determined by a balance between the ligation-initiated evolution toward high-affinity conformations and factors such as allosteric effectors, gel matrix, and added glycerol that slow ligand-binding-induced relaxation. Thus, it appears that the encapsulation protocol-dependent rate of ligand-binding-induced relaxation determines the functional properties of the initially encapsulated deoxy-HbA population.

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Year:  2004        PMID: 15504030     DOI: 10.1021/bi048531d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  17 in total

1.  Tracking unfolding and refolding of single GFPmut2 molecules.

Authors:  Fabio Cannone; Sara Bologna; Barbara Campanini; Alberto Diaspro; Stefano Bettati; Andrea Mozzarelli; Giuseppe Chirico
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

2.  Modulation of reactivity and conformation within the T-quaternary state of human hemoglobin: the combined use of mutagenesis and sol-gel encapsulation.

Authors:  Uri Samuni; Camille J Roche; David Dantsker; Laura J Juszczak; Joel M Friedman
Journal:  Biochemistry       Date:  2006-03-07       Impact factor: 3.162

3.  Circular dichroism spectroscopy of tertiary and quaternary conformations of human hemoglobin entrapped in wet silica gels.

Authors:  Luca Ronda; Stefano Bruno; Cristiano Viappiani; Stefania Abbruzzetti; Andrea Mozzarelli; Kenneth C Lowe; Stefano Bettati
Journal:  Protein Sci       Date:  2006-07-05       Impact factor: 6.725

Review 4.  Ligand recombination and a hierarchy of solvent slaved dynamics: the origin of kinetic phases in hemeproteins.

Authors:  Uri Samuni; David Dantsker; Camille J Roche; Joel M Friedman
Journal:  Gene       Date:  2007-05-10       Impact factor: 3.688

5.  Steric factors moderate conformational fluidity and contribute to the high proton sensitivity of Root effect hemoglobins.

Authors:  Celia Bonaventura; Robert Henkens; Joel Friedman; Claire J Parker Siburt; Daniel Kraiter; Alvin L Crumbliss
Journal:  Biochim Biophys Acta       Date:  2011-07-08

6.  Heme reactivity is uncoupled from quaternary structure in gel-encapsulated hemoglobin: a resonance Raman spectroscopic study.

Authors:  Eric M Jones; Gurusamy Balakrishnan; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-02-09       Impact factor: 15.419

Review 7.  Therapeutic strategies to alter the oxygen affinity of sickle hemoglobin.

Authors:  Martin K Safo; Gregory J Kato
Journal:  Hematol Oncol Clin North Am       Date:  2014-01-21       Impact factor: 3.722

8.  Tertiary and quaternary allostery in tetrameric hemoglobin from Scapharca inaequivalvis.

Authors:  Luca Ronda; Stefano Bettati; Eric R Henry; Tara Kashav; Jeffrey M Sanders; William E Royer; Andrea Mozzarelli
Journal:  Biochemistry       Date:  2013-03-15       Impact factor: 3.162

9.  Generating S-nitrosothiols from hemoglobin: mechanisms, conformational dependence, and physiological relevance.

Authors:  Camille J Roche; Maria B Cassera; David Dantsker; Rhoda Elison Hirsch; Joel M Friedman
Journal:  J Biol Chem       Date:  2013-06-17       Impact factor: 5.157

10.  Molecular dynamics simulations of hemoglobin A in different states and bound to DPG: effector-linked perturbation of tertiary conformations and HbA concerted dynamics.

Authors:  Monique Laberge; Takashi Yonetani
Journal:  Biophys J       Date:  2007-12-20       Impact factor: 4.033

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