Literature DB >> 12972350

Automated image acquisition and processing using a new generation of 4K x 4K CCD cameras for cryo electron microscopic studies of macromolecular assemblies.

Peijun Zhang1, Mario J Borgnia, Paul Mooney, Dan Shi, Ming Pan, Philip O'Herron, Albert Mao, David Brogan, Jacqueline L S Milne, Sriram Subramaniam.   

Abstract

We have previously reported the development of AutoEM, a software package for semi-automated acquisition of data from a transmission electron microscope. In continuing efforts to improve the speed of structure determination of macromolecular assemblies by electron microscopy, we report here on the performance of a new generation of 4 K CCD cameras for use in cryo electron microscopic applications. We demonstrate that at 120 kV, and at a nominal magnification of 67000 x, power spectra and signal-to-noise ratios for the new 4 K CCD camera are comparable to values obtained for film images scanned using a Zeiss scanner to resolutions as high as approximately 1/6.5A(-1). The specimen area imaged for each exposure on the 4 K CCD is about one-third of the area that can be recorded with a similar exposure on film. The CCD camera also serves the purpose of recording images at low magnification from the center of the hole to measure the thickness of vitrified ice in the hole. The performance of the camera is satisfactory under the low-dose conditions used in cryo electron microscopy, as demonstrated here by the determination of a three-dimensional map at 15 A for the catalytic core of the 1.8 MDa Bacillus stearothermophilus icosahedral pyruvate dehydrogenase complex, and its comparison with the previously reported atomic model for this complex obtained by X-ray crystallography.

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Year:  2003        PMID: 12972350     DOI: 10.1016/s1047-8477(03)00124-2

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  19 in total

1.  Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy.

Authors:  Anna-Clare Milazzo; Anchi Cheng; Arne Moeller; Dmitry Lyumkis; Erica Jacovetty; James Polukas; Mark H Ellisman; Nguyen-Huu Xuong; Bridget Carragher; Clinton S Potter
Journal:  J Struct Biol       Date:  2011-09-10       Impact factor: 2.867

2.  Automated specimen search in cryo-TEM observation with DIFF-defocus imaging.

Authors:  Natsuko Nakamura; Yuko Shimizu; Takao Shinkawa; Munetaka Nakata; Benjamin Bammes; Junjie Zhang; Wah Chiu
Journal:  J Electron Microsc (Tokyo)       Date:  2010-03-30

Review 3.  Automated data collection in single particle electron microscopy.

Authors:  Yong Zi Tan; Anchi Cheng; Clinton S Potter; Bridget Carragher
Journal:  Microscopy (Oxf)       Date:  2015-12-15       Impact factor: 1.571

4.  Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency.

Authors:  Benjamin E Bammes; Ryan H Rochat; Joanita Jakana; Dong-Hua Chen; Wah Chiu
Journal:  J Struct Biol       Date:  2012-01-21       Impact factor: 2.867

5.  Modular software platform for low-dose electron microscopy and tomography.

Authors:  Michael P Marsh; Juan T Chang; Christopher R Booth; Nathan L Liang; Michael F Schmid; Wah Chiu
Journal:  J Microsc       Date:  2007-12       Impact factor: 1.758

6.  Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation.

Authors:  Craig Yoshioka; James Pulokas; Denis Fellmann; Clinton S Potter; Ronald A Milligan; Bridget Carragher
Journal:  J Struct Biol       Date:  2007-04-20       Impact factor: 2.867

7.  A charge coupled device camera with electron decelerator for intermediate voltage electron microscopy.

Authors:  Kenneth H Downing; Paul E Mooney
Journal:  Rev Sci Instrum       Date:  2008-04       Impact factor: 1.523

8.  Achievable resolution from images of biological specimens acquired from a 4k x 4k CCD camera in a 300-kV electron cryomicroscope.

Authors:  Dong-Hua Chen; Joanita Jakana; Xiangan Liu; Michael F Schmid; Wah Chiu
Journal:  J Struct Biol       Date:  2008-04-14       Impact factor: 2.867

9.  4.6A Cryo-EM reconstruction of tobacco mosaic virus from images recorded at 300 keV on a 4k x 4k CCD camera.

Authors:  Daniel K Clare; Elena V Orlova
Journal:  J Struct Biol       Date:  2010-06-15       Impact factor: 2.867

10.  Detective quantum efficiency of electron area detectors in electron microscopy.

Authors:  G McMullan; S Chen; R Henderson; A R Faruqi
Journal:  Ultramicroscopy       Date:  2009-05-07       Impact factor: 2.689

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