Literature DB >> 18512910

Simultaneous detection and deconvolution of congested NMR spectra containing three isotopically labeled species.

Larry R Masterson1, Marco Tonelli, John L Markley, Gianluigi Veglia.   

Abstract

We present a procedure for isolating subspectra corresponding to individual protein or peptide components in a ternary mixture or complex. Each of the three-component species is labeled differently: species A uniformly with 15N, species B uniformly with 15N and 13C, and species C uniformly with 15N but selectively with 13C' or 13Calpha. By using the dual carbon label selective HSQC (DCLS-HSQC) pulse sequence and exploiting differences in 1J 15N-13C coupling patterns to filter selected 15N resonances from detection during a constant time period, a subspectrum from each species can be generated from three spectra acquired from a single sample. Many important biological pathways involve dynamic interactions among members of multicomponent protein assemblies, and this approach offers a powerful way to monitor such processes.

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Year:  2008        PMID: 18512910      PMCID: PMC2662704          DOI: 10.1021/ja802701w

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  Polarization transfer by cross-correlated relaxation in solution NMR with very large molecules.

Authors:  R Riek; G Wider; K Pervushin; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

2.  Angular dependence of 1J(Ni,Calphai) and 2J(Ni,Calpha(i-1)) coupling constants measured in J-modulated HSQCs.

Authors:  Julia Wirmer; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2002-05       Impact factor: 2.835

Review 3.  Studies of protein-ligand interactions by NMR.

Authors:  J Clarkson; I D Campbell
Journal:  Biochem Soc Trans       Date:  2003-10       Impact factor: 5.407

4.  NMR study of nucleotide-induced changes in the nucleotide binding domain of Thermus thermophilus Hsp70 chaperone DnaK: implications for the allosteric mechanism.

Authors:  Matthew Revington; Tina M Holder; Erik R P Zuiderweg
Journal:  J Biol Chem       Date:  2004-06-02       Impact factor: 5.157

Review 5.  NMR studies of protein structure and dynamics.

Authors:  Lewis E Kay
Journal:  J Magn Reson       Date:  2005-04       Impact factor: 2.229

6.  Chemical ligation of folded recombinant proteins: segmental isotopic labeling of domains for NMR studies.

Authors:  R Xu; B Ayers; D Cowburn; T W Muir
Journal:  Proc Natl Acad Sci U S A       Date:  1999-01-19       Impact factor: 11.205

7.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

8.  High-level 2H/13C/15N labeling of proteins for NMR studies.

Authors:  R A Venters; C C Huang; B T Farmer; R Trolard; L D Spicer; C A Fierke
Journal:  J Biomol NMR       Date:  1995-06       Impact factor: 2.835

9.  Measurement of 15N-13C J couplings in staphylococcal nuclease.

Authors:  F Delaglio; D A Torchia; A Bax
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

10.  Dual amino acid-selective and site-directed stable-isotope labeling of the human c-Ha-Ras protein by cell-free synthesis.

Authors:  T Yabuki; T Kigawa; N Dohmae; K Takio; T Terada; Y Ito; E D Laue; J A Cooper; M Kainosho; S Yokoyama
Journal:  J Biomol NMR       Date:  1998-04       Impact factor: 2.835

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  10 in total

1.  A segmental labeling strategy for unambiguous determination of domain-domain interactions of large multi-domain proteins.

Authors:  Jianglei Chen; Jianjun Wang
Journal:  J Biomol NMR       Date:  2011-07-06       Impact factor: 2.835

2.  Frequency-selective heteronuclear dephasing and selective carbonyl labeling to deconvolute crowded spectra of membrane proteins by magic angle spinning NMR.

Authors:  Nathaniel J Traaseth; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2011-03-17       Impact factor: 2.229

3.  Time-shared experiments for efficient assignment of triple-selectively labeled proteins.

Authors:  Frank Löhr; Aisha Laguerre; Christoph Bock; Sina Reckel; Peter J Connolly; Norzehan Abdul-Manan; Franz Tumulka; Rupert Abele; Jonathan M Moore; Volker Dötsch
Journal:  J Magn Reson       Date:  2014-09-30       Impact factor: 2.229

4.  Combinatorial triple-selective labeling as a tool to assist membrane protein backbone resonance assignment.

Authors:  Frank Löhr; Sina Reckel; Mikhail Karbyshev; Peter J Connolly; Norzehan Abdul-Manan; Frank Bernhard; Jonathan M Moore; Volker Dötsch
Journal:  J Biomol NMR       Date:  2012-01-18       Impact factor: 2.835

5.  Simultaneous detection of intra- and inter-molecular paramagnetic relaxation enhancements in protein complexes.

Authors:  Cristina Olivieri; Manu Veliparambil Subrahmanian; Youlin Xia; Jonggul Kim; Fernando Porcelli; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2018-02-02       Impact factor: 2.835

6.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

Authors:  James R Banigan; Anindita Gayen; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

7.  Trapping moving targets with small molecules.

Authors:  Gregory M Lee; Charles S Craik
Journal:  Science       Date:  2009-04-10       Impact factor: 47.728

8.  One-sample approach to determine the relative orientations of proteins in ternary and binary complexes from residual dipolar coupling measurements.

Authors:  Marco Tonelli; Larry R Masterson; Gabriel Cornilescu; John L Markley; Gianluigi Veglia
Journal:  J Am Chem Soc       Date:  2009-10-14       Impact factor: 15.419

9.  An extended combinatorial 15N, 13Cα, and 13C' labeling approach to protein backbone resonance assignment.

Authors:  Frank Löhr; Franz Tumulka; Christoph Bock; Rupert Abele; Volker Dötsch
Journal:  J Biomol NMR       Date:  2015-05-08       Impact factor: 2.835

Review 10.  Probing Protein-Protein Interactions Using Asymmetric Labeling and Carbonyl-Carbon Selective Heteronuclear NMR Spectroscopy.

Authors:  Erik K Larsen; Cristina Olivieri; Caitlin Walker; Manu V S; Jiali Gao; David A Bernlohr; Marco Tonelli; John L Markley; Gianluigi Veglia
Journal:  Molecules       Date:  2018-08-03       Impact factor: 4.411

  10 in total

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