Literature DB >> 14505469

Studies of protein-ligand interactions by NMR.

J Clarkson1, I D Campbell.   

Abstract

Solution-state NMR has become an accepted method for studying the structure of small proteins in solution. This has resulted in over 3000 NMR-based co-ordinate sets being deposited in the Protein Databank. It is becoming increasingly apparent, however, that NMR is also a very powerful tool for accessing interactions between macromolecules and various ligands. These interactions can be assessed at a wide variety of levels, e.g. qualitative screening of libraries of pharmaceuticals and 'chemical shift mapping'. Dissociation constants can sometimes be obtained in such cases. Another example would be the complete three-dimensional structure determination of a protein-ligand complex. Here we briefly describe a few of the principles involved and illustrate the method with recent examples.

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Year:  2003        PMID: 14505469     DOI: 10.1042/bst0311006

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  10 in total

1.  Recognition and cleavage of related to ubiquitin 1 (Rub1) and Rub1-ubiquitin chains by components of the ubiquitin-proteasome system.

Authors:  Rajesh K Singh; Sylvia Zerath; Oded Kleifeld; Martin Scheffner; Michael H Glickman; David Fushman
Journal:  Mol Cell Proteomics       Date:  2012-10-26       Impact factor: 5.911

2.  Guanidinium derivatives bind preferentially and trigger long-distance conformational changes in an engineered T4 lysozyme.

Authors:  Mohammad S Yousef; Nicole Bischoff; Collin M Dyer; Walter A Baase; Brian W Matthews
Journal:  Protein Sci       Date:  2006-04       Impact factor: 6.725

3.  Human melanoma inhibitory protein binds to the FN12-14 Hep II domain of fibronectin.

Authors:  King Tuo Yip; Xueyin Zhong; Nadia Seibel; Oliver Arnolds; Miriam Schöpel; Raphael Stoll
Journal:  Biointerphases       Date:  2017-05-31       Impact factor: 2.456

4.  One-sample approach to determine the relative orientations of proteins in ternary and binary complexes from residual dipolar coupling measurements.

Authors:  Marco Tonelli; Larry R Masterson; Gabriel Cornilescu; John L Markley; Gianluigi Veglia
Journal:  J Am Chem Soc       Date:  2009-10-14       Impact factor: 15.419

5.  Simultaneous detection and deconvolution of congested NMR spectra containing three isotopically labeled species.

Authors:  Larry R Masterson; Marco Tonelli; John L Markley; Gianluigi Veglia
Journal:  J Am Chem Soc       Date:  2008-05-31       Impact factor: 15.419

6.  HEXIM1 targets a repeated GAUC motif in the riboregulator of transcription 7SK and promotes base pair rearrangements.

Authors:  Isabelle Lebars; D Martinez-Zapien; A Durand; J Coutant; B Kieffer; Anne-Catherine Dock-Bregeon
Journal:  Nucleic Acids Res       Date:  2010-07-31       Impact factor: 16.971

Review 7.  The Croonian lecture 2006. Structure of the living cell.

Authors:  Iain D Campbell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-07-27       Impact factor: 6.237

8.  Development of a machine learning method to predict membrane protein-ligand binding residues using basic sequence information.

Authors:  M Xavier Suresh; M Michael Gromiha; Makiko Suwa
Journal:  Adv Bioinformatics       Date:  2015-01-31

9.  Small Molecules Antagonise the MIA-Fibronectin Interaction in Malignant Melanoma.

Authors:  King Tuo Yip; Xue Yin Zhong; Nadia Seibel; Stefanie Pütz; Jasmin Autzen; Raphael Gasper; Eckhard Hofmann; Jürgen Scherkenbeck; Raphael Stoll
Journal:  Sci Rep       Date:  2016-05-06       Impact factor: 4.379

10.  Structural insights on the pamoic acid and the 8 kDa domain of DNA polymerase beta complex: towards the design of higher-affinity inhibitors.

Authors:  Corinne Hazan; François Boudsocq; Virginie Gervais; Olivier Saurel; Marion Ciais; Christophe Cazaux; Jerzy Czaplicki; Alain Milon
Journal:  BMC Struct Biol       Date:  2008-04-16
  10 in total

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