Literature DB >> 18394897

RNA interference guides histone modification during the S phase of chromosomal replication.

Anna Kloc1, Mikel Zaratiegui, Elphege Nora, Rob Martienssen.   

Abstract

BACKGROUND: Heterochromatin is chromosomal material that remains condensed throughout the cell division cycle and silences genes nearby. It is found in almost all eukaryotes, and although discovered (in plants) almost 100 years ago, the mechanism by which heterochromatin is inherited has remained obscure. Heterochromatic silencing and histone H3 lysine-9 methylation (H3K9me2) depend, paradoxically, on heterochromatic transcription and RNA interference (RNAi).
RESULTS: Here, we show that heterochromatin protein 1 in fission yeast (Swi6) is lost via phosphorylation of H3 serine 10 (H3S10) during mitosis, allowing heterochromatic transcripts to transiently accumulate in S phase. Rapid processing of these transcripts into small interfering RNA (siRNA) promotes restoration of H3K9me2 and Swi6 after replication when cohesin is recruited. We also show that RNAi in fission yeast is inhibited at high temperatures, providing a plausible mechanism for epigenetic phenomena that depend on replication and temperature, such as vernalization in plants and position effect variegation in animals.
CONCLUSIONS: These results explain how "silent" heterochromatin can be transcribed and lead to a model for epigenetic inheritance during replication.

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Year:  2008        PMID: 18394897      PMCID: PMC2408823          DOI: 10.1016/j.cub.2008.03.016

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  40 in total

1.  Vernalization requires epigenetic silencing of FLC by histone methylation.

Authors:  Ruth Bastow; Joshua S Mylne; Clare Lister; Zachary Lippman; Robert A Martienssen; Caroline Dean
Journal:  Nature       Date:  2004-01-08       Impact factor: 49.962

Review 2.  Vernalization and flowering time.

Authors:  Richard M Amasino
Journal:  Curr Opin Biotechnol       Date:  2005-04       Impact factor: 9.740

3.  RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing.

Authors:  Ingela Djupedal; Manuela Portoso; Henrik Spåhr; Carolina Bonilla; Claes M Gustafsson; Robin C Allshire; Karl Ekwall
Journal:  Genes Dev       Date:  2005-10-01       Impact factor: 11.361

Review 4.  Many players, one goal: how chromatin states are inherited during cell division.

Authors:  Raffaella Santoro; Filomena De Lucia
Journal:  Biochem Cell Biol       Date:  2005-06       Impact factor: 3.626

5.  RNA polymerase II is required for RNAi-dependent heterochromatin assembly.

Authors:  Hiroaki Kato; Derek B Goto; Robert A Martienssen; Takeshi Urano; Koichi Furukawa; Yota Murakami
Journal:  Science       Date:  2005-06-09       Impact factor: 47.728

6.  A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation.

Authors:  Peter J Horn; Jean-Noël Bastie; Craig L Peterson
Journal:  Genes Dev       Date:  2005-07-15       Impact factor: 11.361

7.  Two novel proteins, dos1 and dos2, interact with rik1 to regulate heterochromatic RNA interference and histone modification.

Authors:  Fei Li; Derek B Goto; Mikel Zaratiegui; Xie Tang; Rob Martienssen; W Zacheus Cande
Journal:  Curr Biol       Date:  2005-08-23       Impact factor: 10.834

8.  Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome.

Authors:  Hugh P Cam; Tomoyasu Sugiyama; Ee Sin Chen; Xi Chen; Peter C FitzGerald; Shiv I S Grewal
Journal:  Nat Genet       Date:  2005-06-24       Impact factor: 38.330

9.  Replication of centromere II of Schizosaccharomyces pombe.

Authors:  J G Smith; M S Caddle; G H Bulboaca; J G Wohlgemuth; M Baum; L Clarke; M P Calos
Journal:  Mol Cell Biol       Date:  1995-09       Impact factor: 4.272

10.  Disruption of the nucleosomes at the replication fork.

Authors:  C Gruss; J Wu; T Koller; J M Sogo
Journal:  EMBO J       Date:  1993-12       Impact factor: 11.598

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  127 in total

1.  Heterochromatin protein 1 homologue Swi6 acts in concert with Ers1 to regulate RNAi-directed heterochromatin assembly.

Authors:  Aki Hayashi; Mayumi Ishida; Rika Kawaguchi; Takeshi Urano; Yota Murakami; Jun-ichi Nakayama
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

Review 2.  Chromatin replication and epigenome maintenance.

Authors:  Constance Alabert; Anja Groth
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-23       Impact factor: 94.444

Review 3.  Ancestral roles of small RNAs: an Ago-centric perspective.

Authors:  Leemor Joshua-Tor; Gregory J Hannon
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-10-01       Impact factor: 10.005

4.  Tackling the epigenome: challenges and opportunities for collaboration.

Authors:  John S Satterlee; Dirk Schübeler; Huck-Hui Ng
Journal:  Nat Biotechnol       Date:  2010-10       Impact factor: 54.908

5.  A chromodomain switch mediated by histone H3 Lys 4 acetylation regulates heterochromatin assembly.

Authors:  Blerta Xhemalce; Tony Kouzarides
Journal:  Genes Dev       Date:  2010-03-18       Impact factor: 11.361

Review 6.  A lot about a little dot - lessons learned from Drosophila melanogaster chromosome 4.

Authors:  Nicole C Riddle; Christopher D Shaffer; Sarah C R Elgin
Journal:  Biochem Cell Biol       Date:  2009-02       Impact factor: 3.626

Review 7.  Small RNAs as guardians of the genome.

Authors:  Colin D Malone; Gregory J Hannon
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

Review 8.  Role of chromatin states in transcriptional memory.

Authors:  Sharmistha Kundu; Craig L Peterson
Journal:  Biochim Biophys Acta       Date:  2009-02-21

Review 9.  RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond.

Authors:  Stephane E Castel; Robert A Martienssen
Journal:  Nat Rev Genet       Date:  2013-02       Impact factor: 53.242

10.  Chromosome segregation and organization are targets of 5'-Fluorouracil in eukaryotic cells.

Authors:  Laura Mojardín; Javier Botet; Sergio Moreno; Margarita Salas
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

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