Literature DB >> 8223463

Disruption of the nucleosomes at the replication fork.

C Gruss1, J Wu, T Koller, J M Sogo.   

Abstract

The fate of parental nucleosomes during chromatin replication was studied in vitro using in vitro assembled chromatin containing the whole SV40 genome as well as salt-treated and native SV40 minichromosomes. In vitro assembled minichromosomes were able to replicate efficiently in vitro, when the DNA was preincubated with T-antigen, a cytosolic S100 extract and three deoxynucleoside triphosphates prior to chromatin assembly, indicating that the origin has to be free of nucleosomes for replication initiation. The chromatin structure of the newly synthesized daughter strands in replicating molecules was analysed by psoralen cross-linking of the DNA and by micrococcal nuclease digestion. A 5- and 10-fold excess of protein-free competitor DNA present during minichromosome replication traps the segregating histones. In opposition to published data this suggests that the parental histones remain only loosely or not attached to the DNA in the region of the replication fork. Replication in the putative absence of free histones shows that a subnucleosomal particle is randomly assembled on the daughter strands. The data are compatible with the formation of a H3/H4 tetramer complex under these conditions, supporting the notion that under physiological conditions nucleosome core assembly on the newly synthesized daughter strands occurs by the binding of H2A/H2B dimers to a H3/H4 tetramer complex.

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Year:  1993        PMID: 8223463      PMCID: PMC413883          DOI: 10.1002/j.1460-2075.1993.tb06142.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  46 in total

1.  In vivo studies on the dynamics of histone-DNA interaction: evidence for nucleosome dissolution during replication and transcription and a low level of dissolution independent of both.

Authors:  V Jackson
Journal:  Biochemistry       Date:  1990-01-23       Impact factor: 3.162

2.  In vitro replication through nucleosomes without histone displacement.

Authors:  C Bonne-Andrea; M L Wong; B M Alberts
Journal:  Nature       Date:  1990-02-22       Impact factor: 49.962

3.  Purification and mechanism of action of a nucleosome assembly factor from Xenopus oocytes.

Authors:  M Sapp; A Worcel
Journal:  J Biol Chem       Date:  1990-06-05       Impact factor: 5.157

4.  Transcriptional activator nuclear factor I stimulates the replication of SV40 minichromosomes in vivo and in vitro.

Authors:  L Cheng; T J Kelly
Journal:  Cell       Date:  1989-11-03       Impact factor: 41.582

5.  Multistep pathway for replication-dependent nucleosome assembly.

Authors:  R Fotedar; J M Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

6.  Deposition of newly synthesized histones: misinterpretations due to cross-linking density-labeled proteins with Lomant's reagent.

Authors:  V Jackson
Journal:  Biochemistry       Date:  1987-04-21       Impact factor: 3.162

7.  Assembly and properties of chromatin containing histone H1.

Authors:  A Rodríguez-Campos; A Shimamura; A Worcel
Journal:  J Mol Biol       Date:  1989-09-05       Impact factor: 5.469

8.  The histone H3/H4.N1 complex supplemented with histone H2A-H2B dimers and DNA topoisomerase I forms nucleosomes on circular DNA under physiological conditions.

Authors:  K Zucker; A Worcel
Journal:  J Biol Chem       Date:  1990-08-25       Impact factor: 5.157

9.  Nucleosome assembly in mammalian cell extracts before and after DNA replication.

Authors:  C Gruss; C Gutierrez; W C Burhans; M L DePamphilis; T Koller; J M Sogo
Journal:  EMBO J       Date:  1990-09       Impact factor: 11.598

10.  Stepwise assembly of chromatin during DNA replication in vitro.

Authors:  S Smith; B Stillman
Journal:  EMBO J       Date:  1991-04       Impact factor: 11.598

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  54 in total

1.  The protein encoded by the proto-oncogene DEK changes the topology of chromatin and reduces the efficiency of DNA replication in a chromatin-specific manner.

Authors:  V Alexiadis; T Waldmann; J Andersen; M Mann; R Knippers; C Gruss
Journal:  Genes Dev       Date:  2000-06-01       Impact factor: 11.361

2.  Fast kinetics of chromatin assembly revealed by single-molecule videomicroscopy and scanning force microscopy.

Authors:  B Ladoux; J P Quivy; P Doyle; O du Roure; G Almouzni; J L Viovy
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

3.  Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivo.

Authors:  Maarten Hoek; Bruce Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-30       Impact factor: 11.205

4.  Stimulation of DNA replication from the polyomavirus origin by PCAF and GCN5 acetyltransferases: acetylation of large T antigen.

Authors:  An-Yong Xie; Vladimir P Bermudez; William R Folk
Journal:  Mol Cell Biol       Date:  2002-11       Impact factor: 4.272

Review 5.  Nucleosome assembly and epigenetic inheritance.

Authors:  Mo Xu; Bing Zhu
Journal:  Protein Cell       Date:  2010-10-07       Impact factor: 14.870

Review 6.  Replication of heterochromatin: insights into mechanisms of epigenetic inheritance.

Authors:  Julie A Wallace; Terry L Orr-Weaver
Journal:  Chromosoma       Date:  2005-11-15       Impact factor: 4.316

7.  Topoisomerase II-DNA complexes trapped by ICRF-193 perturb chromatin structure.

Authors:  Thomas Germe; Olivier Hyrien
Journal:  EMBO Rep       Date:  2005-08       Impact factor: 8.807

8.  Compaction kinetics on single DNAs: purified nucleosome reconstitution systems versus crude extract.

Authors:  Gaudeline Wagner; Aurélien Bancaud; Jean-Pierre Quivy; Cédric Clapier; Geneviève Almouzni; Jean-Louis Viovy
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

9.  Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replication.

Authors:  Pierre-Olivier Estève; Hang Gyeong Chin; Andrea Smallwood; George R Feehery; Omkaram Gangisetty; Adam R Karpf; Michael F Carey; Sriharsa Pradhan
Journal:  Genes Dev       Date:  2006-11-03       Impact factor: 11.361

Review 10.  Molecular traffic jams on DNA.

Authors:  Ilya J Finkelstein; Eric C Greene
Journal:  Annu Rev Biophys       Date:  2013-02-28       Impact factor: 12.981

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