Literature DB >> 18314973

NMR hyperfine shifts in blue copper proteins: a quantum chemical investigation.

Yong Zhang1, Eric Oldfield.   

Abstract

We present the results of the first quantum chemical investigations of 1H NMR hyperfine shifts in the blue copper proteins (BCPs): amicyanin, azurin, pseudoazurin, plastocyanin, stellacyanin, and rusticyanin. We find that very large structural models that incorporate extensive hydrogen bond networks, as well as geometry optimization, are required to reproduce the experimental NMR hyperfine shift results, the best theory vs experiment predictions having R2 = 0.94, a slope = 1.01, and a SD = 40.5 ppm (or approximately 4.7% of the overall approximately 860 ppm shift range). We also find interesting correlations between the hyperfine shifts and the bond and ring critical point properties computed using atoms-in-molecules theory, in addition to finding that hyperfine shifts can be well-predicted by using an empirical model, based on the geometry-optimized structures, which in the future should be of use in structure refinement.

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Year:  2008        PMID: 18314973      PMCID: PMC2761745          DOI: 10.1021/ja075978b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  35 in total

1.  Effect of histidine 6 protonation on the active site structure and electron-transfer capabilities of pseudoazurin from Achromobacter cycloclastes.

Authors:  Katsuko Sato; Christopher Dennison
Journal:  Biochemistry       Date:  2002-01-08       Impact factor: 3.162

2.  Atomic resolution crystal structures, EXAFS, and quantum chemical studies of rusticyanin and its two mutants provide insight into its unusual properties.

Authors:  Mark L Barrett; Ian Harvey; Mahesh Sundararajan; Rajeev Surendran; John F Hall; Mark J Ellis; Michael A Hough; Richard W Strange; Ian H Hillier; S Samar Hasnain
Journal:  Biochemistry       Date:  2006-03-07       Impact factor: 3.162

3.  Solid-state NMR of a paramagnetic DIAD-FeII catalyst: sensitivity, resolution enhancement, and structure-based assignments.

Authors:  Gwendal Kervern; Guido Pintacuda; Yong Zhang; Eric Oldfield; Charbel Roukoss; Emile Kuntz; Eberhardt Herdtweck; Jean-Marie Basset; Sylvian Cadars; Anne Lesage; Christophe Copéret; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2006-10-18       Impact factor: 15.419

4.  Reinvestigation of the method used to map the electronic structure of blue copper proteins by NMR relaxation.

Authors:  D Flemming Hansen; Serge I Gorelsky; Ritimukta Sarangi; Keith O Hodgson; Britt Hedman; Hans E M Christensen; Edward I Solomon; Jens J Led
Journal:  J Biol Inorg Chem       Date:  2006-01-24       Impact factor: 3.358

5.  Nuclear magnetic resonance shifts in paramagnetic metalloporphyrins and metalloproteins.

Authors:  Junhong Mao; Yong Zhang; Eric Oldfield
Journal:  J Am Chem Soc       Date:  2002-11-20       Impact factor: 15.419

6.  Metal-ligand interplay in blue copper proteins studied by 1H NMR spectroscopy: Cu(II)-pseudoazurin and Cu(II)-rusticyanin.

Authors:  Antonio Donaire; Beatriz Jiménez; Claudio O Fernández; Roberta Pierattelli; Tomotake Niizeki; José-María Moratal; John F Hall; Takamitsu Kohzuma; S Samar Hasnain; Alejandro J Vila
Journal:  J Am Chem Soc       Date:  2002-11-20       Impact factor: 15.419

7.  Solid-state NMR, crystallographic, and computational investigation of bisphosphonates and farnesyl diphosphate synthase-bisphosphonate complexes.

Authors:  Junhong Mao; Sujoy Mukherjee; Yong Zhang; Rong Cao; John M Sanders; Yongcheng Song; Yonghui Zhang; Gary A Meints; Yi Gui Gao; Dushyant Mukkamala; Michael P Hudock; Eric Oldfield
Journal:  J Am Chem Soc       Date:  2006-11-15       Impact factor: 15.419

8.  The role of hydrogen bonding at the active site of a cupredoxin: the Phe114Pro azurin variant.

Authors:  Sachiko Yanagisawa; Mark J Banfield; Christopher Dennison
Journal:  Biochemistry       Date:  2006-07-25       Impact factor: 3.162

9.  X-ray structure of the cupredoxin amicyanin, from Paracoccus denitrificans, refined at 1.31 A resolution.

Authors:  L M Cunane; Z W Chen; R C Durley; F S Mathews
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-07-01

10.  Accuracy and precision in protein structure analysis: restrained least-squares refinement of the structure of poplar plastocyanin at 1.33 A resolution.

Authors:  J M Guss; H D Bartunik; H C Freeman
Journal:  Acta Crystallogr B       Date:  1992-12-01
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  7 in total

1.  Solid-state ¹⁷O NMR spectroscopy of paramagnetic coordination compounds.

Authors:  Xianqi Kong; Victor V Terskikh; Rahul L Khade; Liu Yang; Amber Rorick; Yong Zhang; Peng He; Yining Huang; Gang Wu
Journal:  Angew Chem Int Ed Engl       Date:  2015-02-18       Impact factor: 15.336

2.  Why copper is preferred over iron for oxygen activation and reduction in haem-copper oxidases.

Authors:  Ambika Bhagi-Damodaran; Matthew A Michael; Qianhong Zhu; Julian Reed; Braddock A Sandoval; Evan N Mirts; Saumen Chakraborty; Pierre Moënne-Loccoz; Yong Zhang; Yi Lu
Journal:  Nat Chem       Date:  2016-11-07       Impact factor: 24.427

Review 3.  Computational investigations of HNO in biology.

Authors:  Yong Zhang
Journal:  J Inorg Biochem       Date:  2012-10-05       Impact factor: 4.155

4.  NMR, IR/Raman, and structural properties in HNO and RNO (R = alkyl and aryl) metalloporphyrins with implication for the HNO-myoglobin complex.

Authors:  Yan Ling; Christopher Mills; Rebecca Weber; Liu Yang; Yong Zhang
Journal:  J Am Chem Soc       Date:  2010-02-10       Impact factor: 15.419

5.  Deciphering the NMR fingerprints of the disordered system with quantum chemical studies.

Authors:  Yan Ling; Yong Zhang
Journal:  J Phys Chem A       Date:  2009-05-21       Impact factor: 2.781

6.  Mössbauer, NMR, geometric, and electronic properties in S = 3/2 iron porphyrins.

Authors:  Yan Ling; Yong Zhang
Journal:  J Am Chem Soc       Date:  2009-05-13       Impact factor: 15.419

7.  Manganese and Cobalt in the Nonheme-Metal-Binding Site of a Biosynthetic Model of Heme-Copper Oxidase Superfamily Confer Oxidase Activity through Redox-Inactive Mechanism.

Authors:  Julian H Reed; Yelu Shi; Qianhong Zhu; Saumen Chakraborty; Evan N Mirts; Igor D Petrik; Ambika Bhagi-Damodaran; Matthew Ross; Pierre Moënne-Loccoz; Yong Zhang; Yi Lu
Journal:  J Am Chem Soc       Date:  2017-08-25       Impact factor: 15.419

  7 in total

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