Literature DB >> 16846224

The role of hydrogen bonding at the active site of a cupredoxin: the Phe114Pro azurin variant.

Sachiko Yanagisawa1, Mark J Banfield, Christopher Dennison.   

Abstract

The Phe114Pro mutation to the cupredoxin azurin (AZ) leads to a number of structural changes at the active site attributed to deletion of one of the hydrogen bonds to the Cys112 ligand, removal of the bulky phenyl group from the hydrophobic patch of the protein, and steric interactions made by the introduced Pro. The remaining hydrogen bond between the coordinating thiolate and the backbone amide of Asn47 is strengthened. At the type-1 copper site, the Cu(II)-O(Gly45) axial interaction decreases, while the metal moves out of the plane formed by the equatorial His46, Cys112, and His117 ligands, shortening the bond to the axially coordinating Met121. The resulting distorted tetrahedral geometry is distinct from the trigonal bipyramidal arrangement in the wild-type (WT) protein. The unique position of the main S(Cys) --> Cu(II) ligand-to-metal charge-transfer transition in AZ (628 nm) has shifted in the Phe114Pro variant to a value that is more typical for cupredoxins (599 nm). This probably occurs because of the removal of the Phe114-Cys112 hydrogen bond. The Phe114Pro mutation results in a 90 mV decrease in the reduction potential of AZ, and removal of the second hydrogen bond to the Cys ligand seems to be the major cause of this change. The C-terminal His117 ligand does not protonate in the reduced Phe114Pro AZ variant, which suggests that none of the structural features altered by the mutation are responsible for the absence of this effect in the WT protein. Upon reduction, the copper displaces further from the equatorial ligand plane and the Cu-S(Met121) bond length decreases. These changes are larger than those seen in the WT protein and contribute to the order of magnitude decrease in the intrinsic electron-transfer capabilities of the Phe114Pro variant.

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Year:  2006        PMID: 16846224     DOI: 10.1021/bi0606851

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  30 in total

1.  Flexibility of the metal-binding region in apo-cupredoxins.

Authors:  María-Eugenia Zaballa; Luciano A Abriata; Antonio Donaire; Alejandro J Vila
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

2.  Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin.

Authors:  Chenghang Zong; Corey J Wilson; Tongye Shen; Pernilla Wittung-Stafshede; Steven L Mayo; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-14       Impact factor: 11.205

3.  Outer-sphere effects on reduction potentials of copper sites in proteins: the curious case of high potential type 2 C112D/M121E Pseudomonas aeruginosa azurin.

Authors:  Kyle M Lancaster; Stephen Sproules; Joshua H Palmer; John H Richards; Harry B Gray
Journal:  J Am Chem Soc       Date:  2010-10-20       Impact factor: 15.419

4.  Designed azurins show lower reorganization free energies for intraprotein electron transfer.

Authors:  Ole Farver; Nicholas M Marshall; Scot Wherland; Yi Lu; Israel Pecht
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-12       Impact factor: 11.205

5.  Rationally tuning the reduction potential of a single cupredoxin beyond the natural range.

Authors:  Nicholas M Marshall; Dewain K Garner; Tiffany D Wilson; Yi-Gui Gao; Howard Robinson; Mark J Nilges; Yi Lu
Journal:  Nature       Date:  2009-11-05       Impact factor: 49.962

6.  Effect of circular permutation on the structure and function of type 1 blue copper center in azurin.

Authors:  Yang Yu; Igor D Petrik; Kelly N Chacón; Parisa Hosseinzadeh; Honghui Chen; Ninian J Blackburn; Yi Lu
Journal:  Protein Sci       Date:  2016-11-04       Impact factor: 6.725

Review 7.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

8.  Spin delocalization over type zero copper.

Authors:  Alexey Potapov; Kyle M Lancaster; John H Richards; Harry B Gray; Daniella Goldfarb
Journal:  Inorg Chem       Date:  2012-03-20       Impact factor: 5.165

9.  Structural Origin of the Large Redox-Linked Reorganization in the 2-Oxoglutarate Dependent Oxygenase, TauD.

Authors:  Christopher W John; Robert P Hausinger; Denis A Proshlyakov
Journal:  J Am Chem Soc       Date:  2019-09-11       Impact factor: 15.419

10.  Metal-binding loop length and not sequence dictates structure.

Authors:  Katsuko Sato; Chan Li; Isabelle Salard; Andrew J Thompson; Mark J Banfield; Christopher Dennison
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-19       Impact factor: 11.205

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