Literature DB >> 12431123

Nuclear magnetic resonance shifts in paramagnetic metalloporphyrins and metalloproteins.

Junhong Mao1, Yong Zhang, Eric Oldfield.   

Abstract

We report the first detailed investigation of the (1)H, (13)C, (15)N, and (19)F nuclear magnetic resonance (NMR) spectroscopic shifts in paramagnetic metalloprotein and metalloporphyrin systems. The >3500 ppm range in experimentally observed hyperfine shifts can be well predicted by using density functional theory (DFT) methods. Using spin-unrestricted methods together with large, locally dense basis sets, we obtain very good correlations between experimental and theoretical results: R(2) = 0.941 (N = 37, p < 0.0001) when using the pure BPW91 functional and R(2) = 0.981 (N = 37, p < 0.0001) when using the hybrid functional, B3LYP. The correlations are even better for C(alpha) and C(beta) shifts alone: C(alpha), R(2) = 0.996 (N = 8, p < 0.0001, B3LYP); C(beta), R(2) = 0.995 (N = 8, p < 0.0001, B3LYP), but are worse for C(meso), in part because of the small range in C(meso) shifts. The results of these theoretical calculations also lead to a revision of previous heme and proximal histidine residue (13)C NMR assignments in deoxymyoglobin which are confirmed by new quantitative NMR measurements. Molecular orbital (MO) analyses of the resulting wave functions provide a graphical representation of the spin density distribution in the [Fe(TPP)(CN)(2)](-) (TPP = 5,10,15,20-tetraphenylporphyrinato) system (S = (1)/(2)), where the spin density is shown to be localized primarily in the d(xz) (or d(yz)) orbital, together with an analysis of the frontier MOs in Fe(TPP)Cl (S = (5)/(2)), Mn(TPP)Cl (S = 2), and a deoxymyoglobin model (S = 2). The ability to now begin to predict essentially all heavy atom NMR hyperfine shifts in paramagnetic metalloporphyrins and metalloproteins using quantum chemical methods should open up new areas of research aimed at structure prediction and refinement in paramagnetic systems in much the same way that DFT methods have been used successfully in the past to predict/refine elements of diamagnetic heme protein structures.

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Year:  2002        PMID: 12431123     DOI: 10.1021/ja020297w

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

Review 1.  Quantum chemical studies of protein structure.

Authors:  Eric Oldfield
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-06-29       Impact factor: 6.237

2.  NMR and DFT investigation of heme ruffling: functional implications for cytochrome c.

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Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

3.  Distinguishing polymorphs of the semiconducting pigment copper phthalocyanine by solid-state NMR and Raman spectroscopy.

Authors:  Medhat A Shaibat; Leah B Casabianca; Diana Y Siberio-Pérez; Adam J Matzger; Yoshitaka Ishii
Journal:  J Phys Chem B       Date:  2010-04-08       Impact factor: 2.991

4.  Solid-state ¹⁷O NMR spectroscopy of paramagnetic coordination compounds.

Authors:  Xianqi Kong; Victor V Terskikh; Rahul L Khade; Liu Yang; Amber Rorick; Yong Zhang; Peng He; Yining Huang; Gang Wu
Journal:  Angew Chem Int Ed Engl       Date:  2015-02-18       Impact factor: 15.336

5.  NMR, IR/Raman, and structural properties in HNO and RNO (R = alkyl and aryl) metalloporphyrins with implication for the HNO-myoglobin complex.

Authors:  Yan Ling; Christopher Mills; Rebecca Weber; Liu Yang; Yong Zhang
Journal:  J Am Chem Soc       Date:  2010-02-10       Impact factor: 15.419

6.  NMR hyperfine shifts in blue copper proteins: a quantum chemical investigation.

Authors:  Yong Zhang; Eric Oldfield
Journal:  J Am Chem Soc       Date:  2008-03-04       Impact factor: 15.419

7.  Mössbauer, NMR, geometric, and electronic properties in S = 3/2 iron porphyrins.

Authors:  Yan Ling; Yong Zhang
Journal:  J Am Chem Soc       Date:  2009-05-13       Impact factor: 15.419

8.  Insights into the Observed trans-Bond Length Variations upon NO Binding to Ferric and Ferrous Porphyrins with Neutral Axial Ligands.

Authors:  Rahul L Khade; Erwin G Abucayon; Douglas R Powell; George B Richter-Addo; Yong Zhang
Journal:  ACS Omega       Date:  2021-09-15

9.  Insights into the binding of pyridines to the iron-sulfur enzyme IspH.

Authors:  Ingrid Span; Ke Wang; Wolfgang Eisenreich; Adelbert Bacher; Yong Zhang; Eric Oldfield; Michael Groll
Journal:  J Am Chem Soc       Date:  2014-05-22       Impact factor: 15.419

  9 in total

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