Literature DB >> 18211868

Wild pedigrees: the way forward.

J M Pemberton1.   

Abstract

Metrics derived from pedigrees are key to investigating several major issues in evolutionary biology, including the quantitative genetic architecture of traits, inbreeding depression, and the evolution of cooperation and inbreeding avoidance. There is merit in studying these issues in natural populations experiencing spatially and temporally variable environmental conditions, since these analyses may yield different results from laboratory studies and allow us to understand population responses to rapid environmental change. Partial pedigrees are now available for several natural populations which are the subject of long-term individual-based studies, and analyses using these pedigrees are leading to important insights. Accurate pedigree construction supported by molecular genetic data is now feasible across a wide range of taxa, and even where only imprecise pedigrees are available it is possible to estimate the consequences of imprecision for the questions of interest. In outbred diploid populations, the pedigree approach is superior to analyses based on marker-based pairwise estimators of coancestry.

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Year:  2008        PMID: 18211868      PMCID: PMC2386891          DOI: 10.1098/rspb.2007.1531

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  75 in total

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Authors:  Tim Clutton-Brock
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

2.  Assignment of paternity groups without access to parental genotypes: multiple mating and developmental plasticity in squid.

Authors:  A M Emery; I J Wilson; S Craig; P R Boyle; L R Noble
Journal:  Mol Ecol       Date:  2001-05       Impact factor: 6.185

3.  Heritability of fitness in a wild mammal population.

Authors:  L E Kruuk; T H Clutton-Brock; J Slate; J M Pemberton; S Brotherstone; F E Guinness
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

4.  Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment.

Authors:  Steven T Kalinowski; Mark L Taper; Tristan C Marshall
Journal:  Mol Ecol       Date:  2007-03       Impact factor: 6.185

Review 5.  Cross-species transfer of nuclear microsatellite markers: potential and limitations.

Authors:  Thelma Barbará; Clarisse Palma-Silva; Gecele M Paggi; Fernanda Bered; Michael F Fay; Christian Lexer
Journal:  Mol Ecol       Date:  2007-09       Impact factor: 6.185

6.  Evaluation of the Genplex SNP typing system and a 49plex forensic marker panel.

Authors:  C Phillips; R Fang; D Ballard; M Fondevila; C Harrison; F Hyland; E Musgrave-Brown; C Proff; E Ramos-Luis; B Sobrino; A Carracedo; M R Furtado; D Syndercombe Court; P M Schneider
Journal:  Forensic Sci Int Genet       Date:  2007-03-23       Impact factor: 4.882

7.  Hypervariability of simple sequences as a general source for polymorphic DNA markers.

Authors:  D Tautz
Journal:  Nucleic Acids Res       Date:  1989-08-25       Impact factor: 16.971

8.  A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene.

Authors:  M Litt; J A Luty
Journal:  Am J Hum Genet       Date:  1989-03       Impact factor: 11.025

9.  PARASITE-MEDIATED SELECTION AGAINST INBRED SOAY SHEEP IN A FREE-LIVING ISLAND POPULATON.

Authors:  David W Coltman; Jill G Pilkington; Judith A Smith; Josephine M Pemberton
Journal:  Evolution       Date:  1999-08       Impact factor: 3.694

10.  Sexually antagonistic genetic variation for fitness in red deer.

Authors:  Katharina Foerster; Tim Coulson; Ben C Sheldon; Josephine M Pemberton; Tim H Clutton-Brock; Loeske E B Kruuk
Journal:  Nature       Date:  2007-06-28       Impact factor: 49.962

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  72 in total

1.  PedMerge: merging pedigrees to facilitate family-based genetic statistical analyses.

Authors:  Rosemarie Plaetke; Federico Balbi
Journal:  Bioinformatics       Date:  2010-09-15       Impact factor: 6.937

Review 2.  Genomics and the future of conservation genetics.

Authors:  Fred W Allendorf; Paul A Hohenlohe; Gordon Luikart
Journal:  Nat Rev Genet       Date:  2010-10       Impact factor: 53.242

3.  Evolution of quantitative traits in the wild: mind the ecology.

Authors:  Josephine M Pemberton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-27       Impact factor: 6.237

4.  Sensitive males: inbreeding depression in an endangered bird.

Authors:  Patricia Brekke; Peter M Bennett; Jinliang Wang; Nathalie Pettorelli; John G Ewen
Journal:  Proc Biol Sci       Date:  2010-06-30       Impact factor: 5.349

5.  Introduction. Evolutionary dynamics of wild populations: the use of long-term pedigree data.

Authors:  L E B Kruuk; W G Hill
Journal:  Proc Biol Sci       Date:  2008-03-22       Impact factor: 5.349

6.  Robustness of linkage maps in natural populations: a simulation study.

Authors:  Jon Slate
Journal:  Proc Biol Sci       Date:  2008-03-22       Impact factor: 5.349

7.  Parentage and sibship inference from multilocus genotype data under polygamy.

Authors:  J Wang; A W Santure
Journal:  Genetics       Date:  2009-02-16       Impact factor: 4.562

8.  Bayesian quantitative trait locus mapping based on reconstruction of recent genetic histories.

Authors:  Dario Gasbarra; Matti Pirinen; Mikko J Sillanpää; Elja Arjas
Journal:  Genetics       Date:  2009-07-20       Impact factor: 4.562

9.  Genome-Wide Analysis of SNPs Is Consistent with No Domestic Dog Ancestry in the Endangered Mexican Wolf (Canis lupus baileyi).

Authors:  Robert R Fitak; Sarah E Rinkevich; Melanie Culver
Journal:  J Hered       Date:  2018-05-11       Impact factor: 2.645

10.  Applying Quantitative Genetic Methods to Primate Social Behavior.

Authors:  Gregory E Blomquist; Lauren J N Brent
Journal:  Int J Primatol       Date:  2014-02-01       Impact factor: 2.264

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