Literature DB >> 18157808

Tailoring 13C labeling for triple-resonance solid-state NMR experiments on aligned samples of proteins.

Neeraj Sinha1, Fabian V Filipp, Lena Jairam, Sang Ho Park, Joel Bradley, Stanley J Opella.   

Abstract

In order to develop triple-resonance solid-state NMR spectroscopy of membrane proteins, we have implemented several different (13)C labeling schemes with the purpose of overcoming the interfering effects of (13)C-(13)C dipole-dipole couplings in stationary samples. The membrane-bound form of the major coat protein of the filamentous bacteriophage Pf1 was used as an example of a well-characterized helical membrane protein. Aligned protein samples randomly enriched to 35% (13)C in all sites and metabolically labeled from bacterial growth on media containing [2-(13)C]-glycerol or [1,3-(13)C]-glycerol enables direct (13)C detection in solid-state NMR experiments without the need for homonuclear (13)C-(13)C dipole-dipole decoupling. The (13)C-detected NMR spectra of Pf1 coat protein show a substantial increase in sensitivity compared to the equivalent (15)N-detected spectra. The isotopic labeling pattern was analyzed for [2-(13)C]-glycerol and [1,3-(13)C]-glycerol as metabolic precursors by solution-state NMR of micelle samples. Polarization inversion spin exchange at the magic angle (PISEMA) and other solid-state NMR experiments work well on 35% random fractionally and metabolically tailored (13)C-labeled samples, in contrast to their failure with conventional 100% uniformly (13)C-labeled samples. 2007 John Wiley & Sons, Ltd

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Year:  2007        PMID: 18157808      PMCID: PMC5010364          DOI: 10.1002/mrc.2121

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  12 in total

1.  Determination of multiple ***φ***-torsion angles in proteins by selective and extensive (13)C labeling and two-dimensional solid-state NMR.

Authors:  M Hong
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

2.  Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy.

Authors:  Federica Castellani; Barth van Rossum; Annette Diehl; Mario Schubert; Kristina Rehbein; Hartmut Oschkinat
Journal:  Nature       Date:  2002-11-07       Impact factor: 49.962

3.  Structure and dynamics of a membrane protein in micelles from three solution NMR experiments.

Authors:  Sangwon Lee; Michael F Mesleh; Stanley J Opella
Journal:  J Biomol NMR       Date:  2003-08       Impact factor: 2.835

4.  Assigning solid-state NMR spectra of aligned proteins using isotropic chemical shifts.

Authors:  Anna A De Angelis; Stanley C Howell; Stanley J Opella
Journal:  J Magn Reson       Date:  2006-09-25       Impact factor: 2.229

5.  Protein dynamics by solid state nuclear magnetic resonance.

Authors:  S J Opella
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

Review 6.  Solid state NMR studies of protein internal dynamics.

Authors:  D A Torchia
Journal:  Annu Rev Biophys Bioeng       Date:  1984

7.  13C-1H dipolar recoupling under very fast magic-angle spinning using virtual pulses.

Authors:  K Takegoshi; T Terao
Journal:  Solid State Nucl Magn Reson       Date:  1999-05       Impact factor: 2.293

8.  Dynamics of amino acid side chains in membrane proteins by high field solid state deuterium nuclear magnetic resonance spectroscopy. Phenylalanine, tyrosine, and tryptophan.

Authors:  R A Kinsey; A Kintanar; E Oldfield
Journal:  J Biol Chem       Date:  1981-09-10       Impact factor: 5.157

9.  Structure of the coat protein in Pf1 bacteriophage determined by solid-state NMR spectroscopy.

Authors:  David S Thiriot; Alexander A Nevzorov; Lena Zagyanskiy; Chin H Wu; Stanley J Opella
Journal:  J Mol Biol       Date:  2004-08-13       Impact factor: 5.469

10.  Assignment of congested NMR spectra: carbonyl backbone enrichment via the Entner-Doudoroff pathway.

Authors:  Amir Goldbourt; Loren A Day; Ann E McDermott
Journal:  J Magn Reson       Date:  2007-08-17       Impact factor: 2.229

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  11 in total

Review 1.  Structure determination of membrane proteins in five easy pieces.

Authors:  Francesca M Marassi; Bibhuti B Das; George J Lu; Henry J Nothnagel; Sang Ho Park; Woo Sung Son; Ye Tian; Stanley J Opella
Journal:  Methods       Date:  2011-09-20       Impact factor: 3.608

2.  Structure determination of a membrane protein in proteoliposomes.

Authors:  Bibhuti B Das; Henry J Nothnagel; George J Lu; Woo Sung Son; Ye Tian; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2012-01-23       Impact factor: 15.419

3.  A general assignment method for oriented sample (OS) solid-state NMR of proteins based on the correlation of resonances through heteronuclear dipolar couplings in samples aligned parallel and perpendicular to the magnetic field.

Authors:  George J Lu; Woo Sung Son; Stanley J Opella
Journal:  J Magn Reson       Date:  2011-01-21       Impact factor: 2.229

4.  1H assisted 13C/15N heteronuclear correlation spectroscopy in oriented sample solid-state NMR of single crystal and magnetically aligned samples.

Authors:  Eugene C Lin; Stanley J Opella
Journal:  J Magn Reson       Date:  2011-04-09       Impact factor: 2.229

5.  Labeling strategies for 13C-detected aligned-sample solid-state NMR of proteins.

Authors:  Fabian V Filipp; Neeraj Sinha; Lena Jairam; Joel Bradley; Stanley J Opella
Journal:  J Magn Reson       Date:  2009-09-02       Impact factor: 2.229

Review 6.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

Review 7.  Membrane protein structure from rotational diffusion.

Authors:  Bibhuti B Das; Sang Ho Park; Stanley J Opella
Journal:  Biochim Biophys Acta       Date:  2014-04-18

8.  (1)H-(13)C Hetero-nuclear dipole-dipole couplings of methyl groups in stationary and magic angle spinning solid-state NMR experiments of peptides and proteins.

Authors:  Chin H Wu; Bibhuti B Das; Stanley J Opella
Journal:  J Magn Reson       Date:  2009-10-21       Impact factor: 2.229

Review 9.  Structure determination of membrane proteins by nuclear magnetic resonance spectroscopy.

Authors:  Stanley J Opella
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2013-04-01       Impact factor: 10.745

10.  A strip-shield improves the efficiency of a solenoid coil in probes for high-field solid-state NMR of lossy biological samples.

Authors:  Chin H Wu; Christopher V Grant; Gabriel A Cook; Sang Ho Park; Stanley J Opella
Journal:  J Magn Reson       Date:  2009-06-09       Impact factor: 2.229

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