Literature DB >> 23577669

Structure determination of membrane proteins by nuclear magnetic resonance spectroscopy.

Stanley J Opella1.   

Abstract

Many biological membranes consist of 50% or more (by weight) membrane proteins, which constitute approximately one-third of all proteins expressed in biological organisms. Helical membrane proteins function as receptors, enzymes, and transporters, among other unique cellular roles. Additionally, most drugs have membrane proteins as their receptors, notably the superfamily of G protein-coupled receptors with seven transmembrane helices. Determining the structures of membrane proteins is a daunting task because of the effects of the membrane environment; specifically, it has been difficult to combine biologically compatible environments with the requirements for the established methods of structure determination. There is strong motivation to determine the structures in their native phospholipid bilayer environment so that perturbations from nonnatural lipids and phases do not have to be taken into account. At present, the only method that can work with proteins in liquid crystalline phospholipid bilayers is solid-state NMR spectroscopy.

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Year:  2013        PMID: 23577669      PMCID: PMC3980955          DOI: 10.1146/annurev-anchem-062012-092631

Source DB:  PubMed          Journal:  Annu Rev Anal Chem (Palo Alto Calif)        ISSN: 1936-1327            Impact factor:   10.745


  128 in total

1.  Structural fitting of PISEMA spectra of aligned proteins.

Authors:  Alexander A Nevzorov; Stanley J Opella
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2.  The Xplor-NIH NMR molecular structure determination package.

Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

3.  NMR structure determination of a membrane protein with two transmembrane helices in micelles: MerF of the bacterial mercury detoxification system.

Authors:  Stanley C Howell; Michael F Mesleh; Stanley J Opella
Journal:  Biochemistry       Date:  2005-04-05       Impact factor: 3.162

4.  Solution-state NMR spectroscopy of a seven-helix transmembrane protein receptor: backbone assignment, secondary structure, and dynamics.

Authors:  Antoine Gautier; John P Kirkpatrick; Daniel Nietlispach
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

Review 5.  Macromolecular modeling with rosetta.

Authors:  Rhiju Das; David Baker
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

6.  Solid-state nuclear magnetic resonance structural studies of proteins.

Authors:  S J Opella; P L Stewart
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

7.  Triton X-100 as the "short-chain lipid" improves the magnetic alignment and stability of membrane proteins in phosphatidylcholine bilayers for oriented-sample solid-state NMR spectroscopy.

Authors:  Sang Ho Park; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2010-09-15       Impact factor: 15.419

8.  Solution NMR spectroscopy of [alpha -15N]lysine-labeled rhodopsin: The single peak observed in both conventional and TROSY-type HSQC spectra is ascribed to Lys-339 in the carboxyl-terminal peptide sequence.

Authors:  J Klein-Seetharaman; P J Reeves; M C Loewen; E V Getmanova; J Chung; H Schwalbe; P E Wright; H G Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-19       Impact factor: 11.205

9.  The three-dimensional structure of bovine rhodopsin determined by electron cryomicroscopy.

Authors:  Angelika Krebs; Patricia C Edwards; Claudio Villa; Jade Li; Gebhard F X Schertler
Journal:  J Biol Chem       Date:  2003-09-25       Impact factor: 5.157

10.  Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy.

Authors:  R Henderson; J M Baldwin; T A Ceska; F Zemlin; E Beckmann; K H Downing
Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

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  21 in total

1.  NMR-based conformational ensembles explain pH-gated opening and closing of OmpG channel.

Authors:  Tiandi Zhuang; Christina Chisholm; Min Chen; Lukas K Tamm
Journal:  J Am Chem Soc       Date:  2013-10-01       Impact factor: 15.419

2.  Motion-adapted pulse sequences for oriented sample (OS) solid-state NMR of biopolymers.

Authors:  George J Lu; Stanley J Opella
Journal:  J Chem Phys       Date:  2013-08-28       Impact factor: 3.488

3.  Preserved Transmembrane Segment Topology, Structure, and Dynamics in Disparate Micellar Environments.

Authors:  David N Langelaan; Aditya Pandey; Muzaddid Sarker; Jan K Rainey
Journal:  J Phys Chem Lett       Date:  2017-05-12       Impact factor: 6.475

4.  The development of solid-state NMR of membrane proteins.

Authors:  Stanley J Opella
Journal:  Biomed Spectrosc Imaging       Date:  2014

5.  Resonance assignments of a membrane protein in phospholipid bilayers by combining multiple strategies of oriented sample solid-state NMR.

Authors:  George J Lu; Stanley J Opella
Journal:  J Biomol NMR       Date:  2013-12-20       Impact factor: 2.835

6.  In situ structural studies of Anabaena sensory rhodopsin in the E. coli membrane.

Authors:  Meaghan E Ward; Shenlin Wang; Rachel Munro; Emily Ritz; Ivan Hung; Peter L Gor'kov; Yunjiang Jiang; Hongjun Liang; Leonid S Brown; Vladimir Ladizhansky
Journal:  Biophys J       Date:  2015-04-07       Impact factor: 4.033

7.  Concentration-dependent changes to diffusion and chemical shift of internal standard molecules in aqueous and micellar solutions.

Authors:  Benjamin Morash; Muzaddid Sarker; Jan K Rainey
Journal:  J Biomol NMR       Date:  2018-06-06       Impact factor: 2.835

8.  Experiments optimized for magic angle spinning and oriented sample solid-state NMR of proteins.

Authors:  Bibhuti B Das; Eugene C Lin; Stanley J Opella
Journal:  J Phys Chem B       Date:  2013-10-07       Impact factor: 2.991

Review 9.  NMR structures of membrane proteins in phospholipid bilayers.

Authors:  Jasmina Radoicic; George J Lu; Stanley J Opella
Journal:  Q Rev Biophys       Date:  2014-07-17       Impact factor: 5.318

Review 10.  Membrane protein structure from rotational diffusion.

Authors:  Bibhuti B Das; Sang Ho Park; Stanley J Opella
Journal:  Biochim Biophys Acta       Date:  2014-04-18
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