Literature DB >> 21964394

Structure determination of membrane proteins in five easy pieces.

Francesca M Marassi1, Bibhuti B Das, George J Lu, Henry J Nothnagel, Sang Ho Park, Woo Sung Son, Ye Tian, Stanley J Opella.   

Abstract

Rotational Alignment (RA) solid-state NMR provides the basis for a general method for determining the structures of membrane proteins in phospholipid bilayers under physiological conditions. Membrane proteins are high priority targets for structure determination, and are challenging for existing experimental methods. Because membrane proteins reside in liquid crystalline phospholipid bilayer membranes it is important to study them in this type of environment. The RA solid-state NMR approach we have developed can be summarized in five steps, and incorporates methods of molecular biology, biochemistry, sample preparation, the implementation of NMR experiments, and structure calculations. It relies on solid-state NMR spectroscopy to obtain high-resolution spectra and residue-specific structural restraints for membrane proteins that undergo rotational diffusion around the membrane normal, but whose mobility is otherwise restricted by interactions with the membrane phospholipids. High resolution spectra of membrane proteins alone and in complex with other proteins and ligands set the stage for structure determination and functional studies of these proteins in their native, functional environment.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21964394      PMCID: PMC3264820          DOI: 10.1016/j.ymeth.2011.09.009

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  69 in total

1.  Structure determination of aligned samples of membrane proteins by NMR spectroscopy.

Authors:  Alexander A Nevzorov; Michael F Mesleh; Stanley J Opella
Journal:  Magn Reson Chem       Date:  2004-02       Impact factor: 2.447

2.  Structural fitting of PISEMA spectra of aligned proteins.

Authors:  Alexander A Nevzorov; Stanley J Opella
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

3.  The Xplor-NIH NMR molecular structure determination package.

Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

4.  Dipolar waves map the structure and topology of helices in membrane proteins.

Authors:  Michael F Mesleh; Sangwon Lee; Gianluigi Veglia; David S Thiriot; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2003-07-23       Impact factor: 15.419

5.  NMR structure determination of a membrane protein with two transmembrane helices in micelles: MerF of the bacterial mercury detoxification system.

Authors:  Stanley C Howell; Michael F Mesleh; Stanley J Opella
Journal:  Biochemistry       Date:  2005-04-05       Impact factor: 3.162

6.  Multipass membrane protein structure prediction using Rosetta.

Authors:  Vladimir Yarov-Yarovoy; Jack Schonbrun; David Baker
Journal:  Proteins       Date:  2006-03-01

Review 7.  Multidimensional solid state NMR of anisotropic interactions in peptides and proteins.

Authors:  Benjamin J Wylie; Chad M Rienstra
Journal:  J Chem Phys       Date:  2008-02-07       Impact factor: 3.488

Review 8.  Macromolecular modeling with rosetta.

Authors:  Rhiju Das; David Baker
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

9.  Solid-state nuclear magnetic resonance structural studies of proteins.

Authors:  S J Opella; P L Stewart
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

10.  Assignment strategies for large proteins by magic-angle spinning NMR: the 21-kDa disulfide-bond-forming enzyme DsbA.

Authors:  Lindsay J Sperling; Deborah A Berthold; Terry L Sasser; Victoria Jeisy-Scott; Chad M Rienstra
Journal:  J Mol Biol       Date:  2010-04-13       Impact factor: 5.469

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  17 in total

Review 1.  Helical membrane protein conformations and their environment.

Authors:  Timothy A Cross; Dylan T Murray; Anthony Watts
Journal:  Eur Biophys J       Date:  2013-09-01       Impact factor: 1.733

2.  SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Authors:  Lucio Ferella; Claudio Luchinat; Enrico Ravera; Antonio Rosato
Journal:  J Biomol NMR       Date:  2013-11-17       Impact factor: 2.835

3.  The development of solid-state NMR of membrane proteins.

Authors:  Stanley J Opella
Journal:  Biomed Spectrosc Imaging       Date:  2014

4.  Structure determination of a membrane protein in proteoliposomes.

Authors:  Bibhuti B Das; Henry J Nothnagel; George J Lu; Woo Sung Son; Ye Tian; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2012-01-23       Impact factor: 15.419

5.  AssignFit: a program for simultaneous assignment and structure refinement from solid-state NMR spectra.

Authors:  Ye Tian; Charles D Schwieters; Stanley J Opella; Francesca M Marassi
Journal:  J Magn Reson       Date:  2011-10-08       Impact factor: 2.229

6.  Membrane protein structure determination in membrana.

Authors:  Yi Ding; Yong Yao; Francesca M Marassi
Journal:  Acc Chem Res       Date:  2013-06-24       Impact factor: 22.384

Review 7.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

8.  Yeast-expressed human membrane protein aquaporin-1 yields excellent resolution of solid-state MAS NMR spectra.

Authors:  Sanaz Emami; Ying Fan; Rachel Munro; Vladimir Ladizhansky; Leonid S Brown
Journal:  J Biomol NMR       Date:  2013-01-24       Impact factor: 2.835

Review 9.  NMR structures of membrane proteins in phospholipid bilayers.

Authors:  Jasmina Radoicic; George J Lu; Stanley J Opella
Journal:  Q Rev Biophys       Date:  2014-07-17       Impact factor: 5.318

Review 10.  Membrane protein structure from rotational diffusion.

Authors:  Bibhuti B Das; Sang Ho Park; Stanley J Opella
Journal:  Biochim Biophys Acta       Date:  2014-04-18
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