Literature DB >> 10489468

Crystal engineering: a case study using the 24 kDa fragment of the DNA gyrase B subunit from Escherichia coli.

A D'Arcy1, M Stihle, D Kostrewa, G Dale.   

Abstract

Site-directed mutagenesis was used to determine the efficacy of changing surface residues to improve crystal quality. Nine mutants of the 24 kDa fragment of the Escherichia coli DNA gyrase B subunit were produced, changing residues on the protein's surface. The mutations changed either the charge or the polarity of the wild-type amino acid. It was found that single amino-acid changes on the surface could have a dramatic effect on the crystallization properties of the protein and generally resulted in an improvement in the number of crystal-screen hits as well as an improvement in crystal quality. It is concluded that crystal engineering is a valuable tool for protein crystallography.

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Year:  1999        PMID: 10489468     DOI: 10.1107/s0907444999008136

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  13 in total

1.  Structure-guided expansion of the substrate range of methylmalonyl coenzyme A synthetase (MatB) of Rhodopseudomonas palustris.

Authors:  Heidi A Crosby; Katherine C Rank; Ivan Rayment; Jorge C Escalante-Semerena
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

2.  Combining site-specific mutagenesis and seeding as a strategy to crystallize 'difficult' proteins: the case of Staphylococcus aureus thioredoxin.

Authors:  Goedele Roos; Elke Brosens; Khadija Wahni; Aline Desmyter; Silvia Spinelli; Lode Wyns; Joris Messens; Remy Loris
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-30

3.  An unexpected outcome of surface engineering an integral membrane protein: improved crystallization of cytochrome ba(3) from Thermus thermophilus.

Authors:  Bin Liu; V Mitch Luna; Ying Chen; C David Stout; James A Fee
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-11-21

4.  Improving protein crystal quality by selective removal of a Ca(2+)-dependent membrane-insertion loop.

Authors:  David B Neau; Nathaniel C Gilbert; Sue G Bartlett; Adam Dassey; Marcia E Newcomer
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-10-24

5.  Crystallization of a pentapeptide-repeat protein by reductive cyclic pentylation of free amines with glutaraldehyde.

Authors:  Matthew W Vetting; Subray S Hegde; John S Blanchard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-04-18

6.  Improvement of crystal quality by surface mutations of beta-lactamase Toho-1.

Authors:  Tatsuro Shimamura; Yasushi Nitanai; Takuro Uchiyama; Hiroshi Matsuzawa
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-03-25

7.  Structural insights into the substrate specificity of the Rhodopseudomonas palustris protein acetyltransferase RpPat: identification of a loop critical for recognition by RpPat.

Authors:  Heidi A Crosby; Katherine C Rank; Ivan Rayment; Jorge C Escalante-Semerena
Journal:  J Biol Chem       Date:  2012-10-17       Impact factor: 5.157

8.  Large-scale evaluation of protein reductive methylation for improving protein crystallization.

Authors:  Youngchang Kim; Pearl Quartey; Hui Li; Lour Volkart; Catherine Hatzos; Changsoo Chang; Boguslaw Nocek; Marianne Cuff; Jerzy Osipiuk; Kemin Tan; Yao Fan; Lance Bigelow; Natalia Maltseva; Ruiying Wu; Maria Borovilos; Erika Duggan; Min Zhou; T Andrew Binkowski; Rong-guang Zhang; Andrzej Joachimiak
Journal:  Nat Methods       Date:  2008-10       Impact factor: 28.547

9.  Polymer-driven crystallization.

Authors:  Sehat Nauli; Saman Farr; Yueh-Jung Lee; Hye-Yeon Kim; Salem Faham; James U Bowie
Journal:  Protein Sci       Date:  2007-11       Impact factor: 6.725

10.  Systematic replacement of lysine with glutamine and alanine in Escherichia coli malate synthase G: effect on crystallization.

Authors:  David M Anstrom; Leslie Colip; Brian Moshofsky; Eric Hatcher; S James Remington
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-11-24
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