Literature DB >> 12454455

The impact of Glu-->Ala and Glu-->Asp mutations on the crystallization properties of RhoGDI: the structure of RhoGDI at 1.3 A resolution.

Agnieszka Mateja1, Yancho Devedjiev, Daniel Krowarsch, Kenton Longenecker, Zbigniew Dauter, Jacek Otlewski, Zygmunt S Derewenda.   

Abstract

It is hypothesized that surface residues with high conformational entropy, specifically lysines and glutamates, impede protein crystallization. In a previous study using a model system of Rho-specific guanine nucleotide dissociation inhibitor (RhoGDI), it was shown that mutating Lys residues to Ala results in enhanced crystallizability, particularly when clusters of lysines are targeted. It was also shown that one of these mutants formed crystals that yielded diffraction to 2.0 A, a significant improvement on the wild-type protein crystals. In the current paper, an analysis of the impact of surface mutations replacing Glu residues with Ala or Asp on the stability and crystallization properties of RhoGDI is presented. The Glu-->Ala (Asp) mutants are generally more likely to produce crystals of the protein than the wild-type and in one case the resulting crystals yielded a diffraction pattern to 1.2 A resolution. This occurs in spite of the fact that mutating surface Glu residues almost invariably affects the protein's stability, as illustrated by the reduced deltaG between folded and unfolded forms measured by isothermal equilibrium denaturation. The present study strongly supports the notion that rational surface mutagenesis can be an effective tool in overcoming problems stemming from the protein's recalcitrance to crystallization and may also yield dramatic improvements in crystal quality.

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Year:  2002        PMID: 12454455     DOI: 10.1107/s090744490201394x

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  32 in total

1.  Harvesting the high-hanging fruit: the structure of the YdeN gene product from Bacillus subtilis at 1.8 angstroms resolution.

Authors:  Izabela Janda; Yancho Devedjiev; David Cooper; Maksymilian Chruszcz; Urszula Derewenda; Aleksandra Gabrys; Wladek Minor; Andrzej Joachimiak; Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-05-21

2.  Circular permutation as a tool to reduce surface entropy triggers crystallization of the signal recognition particle receptor beta subunit.

Authors:  Thomas U Schwartz; Rudolf Walczak; Günter Blobel
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

3.  Application of protein engineering to enhance crystallizability and improve crystal properties.

Authors:  Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-04-21

4.  DNA shuffling as a tool for protein crystallization.

Authors:  Robert J Keenan; Daniel L Siehl; Rebecca Gorton; Linda A Castle
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-10       Impact factor: 11.205

5.  Combining site-specific mutagenesis and seeding as a strategy to crystallize 'difficult' proteins: the case of Staphylococcus aureus thioredoxin.

Authors:  Goedele Roos; Elke Brosens; Khadija Wahni; Aline Desmyter; Silvia Spinelli; Lode Wyns; Joris Messens; Remy Loris
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-30

6.  An unexpected outcome of surface engineering an integral membrane protein: improved crystallization of cytochrome ba(3) from Thermus thermophilus.

Authors:  Bin Liu; V Mitch Luna; Ying Chen; C David Stout; James A Fee
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-11-21

7.  The role of entropy and polarity in intermolecular contacts in protein crystals.

Authors:  Marcin Cieślik; Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-04-18

8.  Improvement of crystal quality by surface mutations of beta-lactamase Toho-1.

Authors:  Tatsuro Shimamura; Yasushi Nitanai; Takuro Uchiyama; Hiroshi Matsuzawa
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-03-25

9.  Effect of leucine-to-methionine substitutions on the diffraction quality of histone chaperone SET/TAF-Ibeta/INHAT crystals.

Authors:  Miki Senda; Shinsuke Muto; Masami Horikoshi; Toshiya Senda
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-09-30

10.  Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data.

Authors:  W Nicholson Price; Yang Chen; Samuel K Handelman; Helen Neely; Philip Manor; Richard Karlin; Rajesh Nair; Jinfeng Liu; Michael Baran; John Everett; Saichiu N Tong; Farhad Forouhar; Swarup S Swaminathan; Thomas Acton; Rong Xiao; Joseph R Luft; Angela Lauricella; George T DeTitta; Burkhard Rost; Gaetano T Montelione; John F Hunt
Journal:  Nat Biotechnol       Date:  2009-01       Impact factor: 54.908

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