Literature DB >> 18077350

Revealing the multiple structures of serine.

Susana Blanco1, M Eugenia Sanz, Juan C López, José L Alonso.   

Abstract

We explored the conformational landscape of the proteinogenic amino acid serine [CH(2)OH CH(NH(2)) COOH] in the gas phase. Solid serine was vaporized by laser ablation, expanded in a supersonic jet, and characterized by Fourier transform microwave spectroscopy. In the isolation conditions of the jet there have been discovered up to seven different neutral (non-zwitterionic) structures of serine, which are conclusively identified by the comparison between the experimental values of the rotational and quadrupole coupling constants with those predicted by ab initio calculations. These seven forms can serve as a basis to represent the shape of serine in the gas phase. From the postexpansion abundances we derived the conformational stability trend, which is controlled by the subtle network of intramolecular hydrogen bonds formed between the polar groups in the amino acid backbone and the hydroxy side chain. It is proposed that conformational cooling perturbs the equilibrium conformational distribution; thus, some of the lower-energy forms are "missing" in the supersonic expansion.

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Year:  2007        PMID: 18077350      PMCID: PMC2154405          DOI: 10.1073/pnas.0705676104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

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Authors:  Max P Bernstein; Jason P Dworkin; Scott A Sandford; George W Cooper; Louis J Allamandola
Journal:  Nature       Date:  2002-03-28       Impact factor: 49.962

2.  The structure of neutral proline.

Authors:  Alberto Lesarri; Santiago Mata; Emilio J Cocinero; Susana Blanco; Juan C López; José L Alonso
Journal:  Angew Chem Int Ed Engl       Date:  2002-12-16       Impact factor: 15.336

3.  The shape of neutral valine.

Authors:  Alberto Lesarri; Emilio J Cocinero; Juan C López; José L Alonso
Journal:  Angew Chem Int Ed Engl       Date:  2004-02-01       Impact factor: 15.336

4.  The gas-phase structure of alanine.

Authors:  Susana Blanco; Alberto Lesarri; Juan C López; José L Alonso
Journal:  J Am Chem Soc       Date:  2004-09-22       Impact factor: 15.419

5.  The glycine-water complex.

Authors:  José L Alonso; Emilio J Cocinero; Alberto Lesarri; M Eugenia Sanz; Juan C López
Journal:  Angew Chem Int Ed Engl       Date:  2006-05-19       Impact factor: 15.336

6.  Microsolvation of formamide: a rotational study.

Authors:  Susana Blanco; Juan C López; Alberto Lesarri; José L Alonso
Journal:  J Am Chem Soc       Date:  2006-09-20       Impact factor: 15.419

7.  The shape of leucine in the gas phase.

Authors:  Emilio J Cocinero; Alberto Lesarri; Jens-Uwe Grabow; Juan C López; José L Alonso
Journal:  Chemphyschem       Date:  2007-03-12       Impact factor: 3.102

8.  The axial and equatorial hydrogen bonds in the tetrahydropyran∙∙∙HF complex.

Authors:  S Antolínez; J C López; J L Alonso
Journal:  Chemphyschem       Date:  2001-02-16       Impact factor: 3.102

Review 9.  From Levinthal to pathways to funnels.

Authors:  K A Dill; H S Chan
Journal:  Nat Struct Biol       Date:  1997-01

10.  Conformational preferences of jet-cooled melatonin: probing trans- and cis-amide regions of the potential energy surface.

Authors:  Gina M Florio; Richard A Christie; Kenneth D Jordan; Timothy S Zwier
Journal:  J Am Chem Soc       Date:  2002-08-28       Impact factor: 15.419

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  10 in total

Review 1.  Competing intramolecular vs. intermolecular hydrogen bonds in solution.

Authors:  Peter I Nagy
Journal:  Int J Mol Sci       Date:  2014-10-28       Impact factor: 5.923

2.  Elucidating the multiple structures of pipecolic acid by rotational spectroscopy.

Authors:  A Simão; C Cabezas; I León; E R Alonso; S Mata; J L Alonso
Journal:  Phys Chem Chem Phys       Date:  2019-02-20       Impact factor: 3.676

3.  Fourier transform microwave spectroscopy of Ac-Ser-NH2: the role of side chain interactions in peptide folding.

Authors:  Carlos Cabezas; Martinus A T Robben; Anouk M Rijs; Isabel Peña; J L Alonso
Journal:  Phys Chem Chem Phys       Date:  2015-08-21       Impact factor: 3.676

4.  Identification of Serine Conformers by Matrix-Isolation IR Spectroscopy Aided by Near-Infrared Laser-Induced Conformational Change, 2D Correlation Analysis, and Quantum Mechanical Anharmonic Computations.

Authors:  Eszter E Najbauer; Gábor Bazsó; Rui Apóstolo; Rui Fausto; Malgorzata Biczysko; Vincenzo Barone; György Tarczay
Journal:  J Phys Chem B       Date:  2015-08-05       Impact factor: 2.991

5.  Conformational study of L-methionine and L-cysteine derivatives through quantum chemical calculations and 3JHH coupling constant analyses.

Authors:  Weslley G D P Silva; Carolyne B Braga; Roberto Rittner
Journal:  Beilstein J Org Chem       Date:  2017-05-17       Impact factor: 2.883

6.  Efficient Amino Acid Conformer Search with Bayesian Optimization.

Authors:  Lincan Fang; Esko Makkonen; Milica Todorović; Patrick Rinke; Xi Chen
Journal:  J Chem Theory Comput       Date:  2021-02-12       Impact factor: 6.006

7.  Vibrational Spectroscopy of Homo- and Heterochiral Amino Acid Dimers: Conformational Landscapes.

Authors:  Haolu Wang; Matthias Heger; Mohamad H Al-Jabiri; Yunjie Xu
Journal:  Molecules       Date:  2021-12-22       Impact factor: 4.411

8.  First-principles data set of 45,892 isolated and cation-coordinated conformers of 20 proteinogenic amino acids.

Authors:  Matti Ropo; Markus Schneider; Carsten Baldauf; Volker Blum
Journal:  Sci Data       Date:  2016-02-16       Impact factor: 6.444

9.  Decoding the Structure of Non-Proteinogenic Amino Acids: The Rotational Spectrum of Jet-Cooled Laser-Ablated Thioproline.

Authors:  Juan Carlos López; Alberto Macario; Andrés Verde; Alfonso Pérez-Encabo; Susana Blanco
Journal:  Molecules       Date:  2021-12-14       Impact factor: 4.411

10.  Looking for the Elusive Imine Tautomer of Creatinine: Different States of Aggregation Studied by Quantum Chemistry and Molecular Spectroscopy.

Authors:  Iker Léon; Nicola Tasinato; Lorenzo Spada; Elena R Alonso; Santiago Mata; Alice Balbi; Cristina Puzzarini; Jose L Alonso; Vincenzo Barone
Journal:  Chempluschem       Date:  2021-07-13       Impact factor: 2.863

  10 in total

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