Literature DB >> 25353178

Competing intramolecular vs. intermolecular hydrogen bonds in solution.

Peter I Nagy1.   

Abstract

A hydrogen bond for a local-minimum-energy structure can be identified according to the definition of the International Union of Pure and Applied Chemistry (IUPAC recommendation 2011) or by finding a special bond critical point on the density map of the structure in the framework of the atoms-in-molecules theory. Nonetheless, a given structural conformation may be simply favored by electrostatic interactions. The present review surveys the in-solution competition of the conformations with intramolecular vs. intermolecular hydrogen bonds for different types of small organic molecules. In their most stable gas-phase structure, an intramolecular hydrogen bond is possible. In a protic solution, the intramolecular hydrogen bond may disrupt in favor of two solute-solvent intermolecular hydrogen bonds. The balance of the increased internal energy and the stabilizing effect of the solute-solvent interactions regulates the new conformer composition in the liquid phase. The review additionally considers the solvent effects on the stability of simple dimeric systems as revealed from molecular dynamics simulations or on the basis of the calculated potential of mean force curves. Finally, studies of the solvent effects on the type of the intermolecular hydrogen bond (neutral or ionic) in acid-base complexes have been surveyed.

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Year:  2014        PMID: 25353178      PMCID: PMC4264129          DOI: 10.3390/ijms151119562

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  82 in total

1.  The stability of the acetic acid dimer in microhydrated environments and in aqueous solution.

Authors:  Hasan Pašalić; Daniel Tunega; Adélia J A Aquino; Georg Haberhauer; Martin H Gerzabek; Hans Lischka
Journal:  Phys Chem Chem Phys       Date:  2012-02-21       Impact factor: 3.676

2.  Infrared spectra of protonated neurotransmitters: serotonin.

Authors:  Anita Lagutschenkov; Judith Langer; Giel Berden; Jos Oomens; Otto Dopfer
Journal:  J Phys Chem A       Date:  2010-11-22       Impact factor: 2.781

3.  Polar (acyclic) isomer of formic acid dimer: gas-phase Raman spectroscopy study and thermodynamic parameters.

Authors:  Roman M Balabin
Journal:  J Phys Chem A       Date:  2009-04-30       Impact factor: 2.781

4.  Tautomeric properties and gas-phase structure of acetylacetone.

Authors:  Natalya V Belova; Heinz Oberhammer; Nguen Hoang Trang; Georgiy V Girichev
Journal:  J Org Chem       Date:  2014-05-29       Impact factor: 4.354

5.  Phenol-quinone tautomerism in (arylazo)naphthols and the analogous Schiff bases: benchmark calculations.

Authors:  S Tahir Ali; Liudmil Antonov; Walter M F Fabian
Journal:  J Phys Chem A       Date:  2014-01-21       Impact factor: 2.781

6.  Formaldehyde oxime <--> nitrosomethane tautomerism.

Authors:  J A Long; N J Harris; K Lammertsma
Journal:  J Org Chem       Date:  2001-10-05       Impact factor: 4.354

7.  Infrared and ultraviolet spectral signatures and conformational preferences of jet-cooled serotonin.

Authors:  Tracy A LeGreve; Esteban E Baquero; Timothy S Zwier
Journal:  J Am Chem Soc       Date:  2007-03-14       Impact factor: 15.419

8.  Theoretical conformational analysis for neurotransmitters in the gas phase and in aqueous solution. Norepinephrine.

Authors:  Peter I Nagy; Giuliano Alagona; Caterina Ghio; Krisztina Takács-Novák
Journal:  J Am Chem Soc       Date:  2003-03-05       Impact factor: 15.419

9.  Seven Conformers of Neutral Dopamine Revealed in the Gas Phase.

Authors:  Carlos Cabezas; Isabel Peña; Juan C López; José L Alonso
Journal:  J Phys Chem Lett       Date:  2013-01-23       Impact factor: 6.475

10.  Are the intramolecular O-H···F and O-H···Cl hydrogen bonds maintained in solution? A theoretical study.

Authors:  Peter I Nagy
Journal:  J Phys Chem A       Date:  2013-03-25       Impact factor: 2.781

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  14 in total

1.  Reactivity of Biliatresone, a Natural Biliary Toxin, with Glutathione, Histamine, and Amino Acids.

Authors:  Kyung A Koo; Orith Waisbourd-Zinman; Rebecca G Wells; Michael Pack; John R Porter
Journal:  Chem Res Toxicol       Date:  2016-01-13       Impact factor: 3.739

2.  Assessing the Conformational Equilibrium of Carboxylic Acid via Quantum Mechanical and Molecular Dynamics Studies on Acetic Acid.

Authors:  Victoria T Lim; Christopher I Bayly; Laszlo Fusti-Molnar; David L Mobley
Journal:  J Chem Inf Model       Date:  2019-02-21       Impact factor: 4.956

3.  Mathematical modeling and physical reality in noncovalent interactions.

Authors:  Peter Politzer; Jane S Murray; Timothy Clark
Journal:  J Mol Model       Date:  2015-02-20       Impact factor: 1.810

Review 4.  Transition Metal Catalysis Controlled by Hydrogen Bonding in the Second Coordination Sphere.

Authors:  Joost N H Reek; Bas de Bruin; Sonja Pullen; Tiddo J Mooibroek; Alexander M Kluwer; Xavier Caumes
Journal:  Chem Rev       Date:  2022-05-20       Impact factor: 72.087

5.  The electronic mechanism ruling the dihydrogen bonds and halogen bonds in weakly bound systems of H3SiH···HOX and H 3SiH···XOH (X = F, Cl, and Br).

Authors:  Boaz G Oliveira; Abedin Zabardasti; Hamid Goudarziafshar; Maryam Salehnassaj
Journal:  J Mol Model       Date:  2015-03-10       Impact factor: 1.810

Review 6.  Engineering (Bio)Materials through Shrinkage and Expansion.

Authors:  Mian Wang; Wanlu Li; Guosheng Tang; Carlos Ezio Garciamendez-Mijares; Yu Shrike Zhang
Journal:  Adv Healthc Mater       Date:  2021-06-16       Impact factor: 11.092

7.  Theoretical in-Solution Conformational/Tautomeric Analyses for Chain Systems with Conjugated Double Bonds Involving Nitrogen(s).

Authors:  Peter I Nagy
Journal:  Int J Mol Sci       Date:  2015-05-13       Impact factor: 5.923

8.  Development of Taste Sensor to Detect Non-Charged Bitter Substances.

Authors:  Jumpei Yoshimatsu; Kiyoshi Toko; Yusuke Tahara; Misaki Ishida; Masaaki Habara; Hidekazu Ikezaki; Honami Kojima; Saeri Ikegami; Miyako Yoshida; Takahiro Uchida
Journal:  Sensors (Basel)       Date:  2020-06-18       Impact factor: 3.576

9.  A Study about Regioisomeric Hydroquinones with Multiple Intramolecular Hydrogen Bonding.

Authors:  Maximiliano Martínez-Cifuentes; Wilson Cardona; Claudio Saitz; Boris Weiss-López; Ramiro Araya-Maturana
Journal:  Molecules       Date:  2017-04-07       Impact factor: 4.411

Review 10.  H-Bond: Τhe Chemistry-Biology H-Bridge.

Authors:  George N Pairas; Petros G Tsoungas
Journal:  ChemistrySelect       Date:  2016-09-20       Impact factor: 2.109

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