Literature DB >> 26201050

Identification of Serine Conformers by Matrix-Isolation IR Spectroscopy Aided by Near-Infrared Laser-Induced Conformational Change, 2D Correlation Analysis, and Quantum Mechanical Anharmonic Computations.

Eszter E Najbauer1, Gábor Bazsó1, Rui Apóstolo2, Rui Fausto2, Malgorzata Biczysko3, Vincenzo Barone4, György Tarczay1.   

Abstract

The conformers of α-serine were investigated by matrix-isolation IR spectroscopy combined with NIR laser irradiation. This method, aided by 2D correlation analysis, enabled unambiguously grouping the spectral lines to individual conformers. On the basis of comparison of at least nine experimentally observed vibrational transitions of each conformer with empirically scaled (SQM) and anharmonic (GVPT2) computed IR spectra, six conformers were identified. In addition, the presence of at least one more conformer in Ar matrix was proved, and a short-lived conformer with a half-life of (3.7 ± 0.5) × 10(3) s in N2 matrix was generated by NIR irradiation. The analysis of the NIR laser-induced conversions revealed that the excitation of the stretching overtone of both the side chain and the carboxylic OH groups can effectively promote conformational changes, but remarkably different paths were observed for the two kinds of excitations.

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Year:  2015        PMID: 26201050      PMCID: PMC5892712          DOI: 10.1021/acs.jpcb.5b05768

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  37 in total

1.  On the contribution of intramolecular H-bonding entropy to the conformational stability of alanine conformations.

Authors:  Bert Lambie; Riet Ramaekers; Guido Maes
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2003-04       Impact factor: 4.098

2.  Revealing the multiple structures of serine.

Authors:  Susana Blanco; M Eugenia Sanz; Juan C López; José L Alonso
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-12       Impact factor: 11.205

3.  Near-infrared laser induced conformational change of alanine in low-temperature matrixes and the tunneling lifetime of its conformer VI.

Authors:  Gábor Bazsó; Eszter E Najbauer; Gábor Magyarfalvi; György Tarczay
Journal:  J Phys Chem A       Date:  2013-02-27       Impact factor: 2.781

4.  Exploring the conformational space of cysteine by matrix isolation spectroscopy combined with near-infrared laser induced conformational change.

Authors:  Eszter E Najbauer; Gábor Bazsó; Sándor Góbi; Gábor Magyarfalvi; György Tarczay
Journal:  J Phys Chem B       Date:  2014-02-11       Impact factor: 2.991

5.  Formic and acetic acids in a nitrogen matrix: Enhanced stability of the higher-energy conformer.

Authors:  Susy Lopes; Alexandra V Domanskaya; Rui Fausto; Markku Räsänen; Leonid Khriachtchev
Journal:  J Chem Phys       Date:  2010-10-14       Impact factor: 3.488

6.  Glycine conformers: a never-ending story?

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Cristina Puzzarini
Journal:  Phys Chem Chem Phys       Date:  2013-02-07       Impact factor: 3.676

7.  Tunneling lifetime of the ttc/VIp conformer of glycine in low-temperature matrices.

Authors:  Gábor Bazsó; Gábor Magyarfalvi; György Tarczay
Journal:  J Phys Chem A       Date:  2012-10-23       Impact factor: 2.781

8.  Stepwise conformational cooling towards a single isomeric state in the four internal rotors system 1,2-butanediol.

Authors:  Igor D Reva; António J Lopes Jesus; Mário T S Rosado; Rui Fausto; M Ermelinda Eusébio; J S Redinha
Journal:  Phys Chem Chem Phys       Date:  2006-12-07       Impact factor: 3.676

9.  Near-IR laser generation of a high-energy conformer of L-alanine and the mechanism of its decay in a low-temperature nitrogen matrix.

Authors:  Cláudio M Nunes; Leszek Lapinski; Rui Fausto; Igor Reva
Journal:  J Chem Phys       Date:  2013-03-28       Impact factor: 3.488

10.  Generalized Vibrational Perturbation Theory for Rotovibrational Energies of Linear, Symmetric and Asymmetric Tops: Theory, Approximations, and Automated Approaches to Deal with Medium-to-Large Molecular Systems.

Authors:  Matteo Piccardo; Julien Bloino; Vincenzo Barone
Journal:  Int J Quantum Chem       Date:  2015-06-16       Impact factor: 2.444

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  1 in total

1.  Reliable vibrational wavenumbers for C=O and N-H stretchings of isolated and hydrogen-bonded nucleic acid bases.

Authors:  Teresa Fornaro; Malgorzata Biczysko; Julien Bloino; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2016-03-28       Impact factor: 3.676

  1 in total

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