Literature DB >> 17995026

Dynamics of an idealized model of microtubule growth and catastrophe.

T Antal1, P L Krapivsky, S Redner, M Mailman, B Chakraborty.   

Abstract

We investigate a simple dynamical model of a microtubule that evolves by attachment of guanosine triphosphate (GTP) tubulin to its end, irreversible conversion of GTP to guanosine diphosphate (GDP) tubulin by hydrolysis, and detachment of GDP at the end of a microtubule. As a function of rates of these processes, the microtubule can grow steadily or its length can fluctuate wildly. In the regime where detachment can be neglected, we find exact expressions for the tubule and GTP cap length distributions, as well as power-law length distributions of GTP and GDP islands. In the opposite limit of instantaneous detachment, we find the time between catastrophes, where the microtubule shrinks to zero length, and determine the size distribution of avalanches (sequence of consecutive GDP detachment events). We obtain the phase diagram for general rates and verify our predictions by numerical simulations.

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Year:  2007        PMID: 17995026      PMCID: PMC2546874          DOI: 10.1103/PhysRevE.76.041907

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  26 in total

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Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

2.  Organization of growing random networks.

Authors:  P L Krapivsky; S Redner
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-05-24

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Authors:  Maxim I Molodtsov; Elena A Ermakova; Emmanuil E Shnol; Ekaterina L Grishchuk; J Richard McIntosh; Fazly I Ataullakhanov
Journal:  Biophys J       Date:  2005-02-18       Impact factor: 4.033

4.  Dynamic instability of microtubules: effect of catastrophe-suppressing drugs.

Authors:  Pankaj Kumar Mishra; Ambarish Kunwar; Sutapa Mukherji; Debashish Chowdhury
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5.  Nonequilibrium self-assembly of linear fibers: microscopic treatment of growth, decay, catastrophe and rescue.

Authors:  Chenghang Zong; Ting Lu; Tongye Shen; Peter G Wolynes
Journal:  Phys Biol       Date:  2006-03-31       Impact factor: 2.583

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8.  Dynamics of Microtubule Instabilities.

Authors:  T Antal; P L Krapivsky; S Redner
Journal:  J Stat Mech       Date:  2007-05-01       Impact factor: 2.231

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Journal:  J Cell Biol       Date:  1995-06       Impact factor: 10.539

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Journal:  J Cell Biol       Date:  1991-09       Impact factor: 10.539

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  11 in total

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Journal:  Biophys J       Date:  2012-03-20       Impact factor: 4.033

2.  Role of ATP-hydrolysis in the dynamics of a single actin filament.

Authors:  Padinhateeri Ranjith; Kirone Mallick; Jean-François Joanny; David Lacoste
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

3.  Modeling the effects of drug binding on the dynamic instability of microtubules.

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Journal:  Phys Biol       Date:  2011-08-12       Impact factor: 2.583

4.  Nonequilibrium self-assembly of a filament coupled to ATP/GTP hydrolysis.

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Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

5.  Probing the origin of tubulin rigidity with molecular simulations.

Authors:  Ruxandra I Dima; Harshad Joshi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-07       Impact factor: 11.205

6.  Theoretical modeling of aging effects in microtubule dynamics.

Authors:  Maximilian Ebbinghaus; Ludger Santen
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

7.  Dynamic instability of a growing adsorbed polymorphic filament.

Authors:  Stefano Zapperi; L Mahadevan
Journal:  Biophys J       Date:  2011-07-20       Impact factor: 4.033

8.  Force-induced dynamical properties of multiple cytoskeletal filaments are distinct from that of single filaments.

Authors:  Dipjyoti Das; Dibyendu Das; Ranjith Padinhateeri
Journal:  PLoS One       Date:  2014-12-22       Impact factor: 3.240

9.  Signatures of a macroscopic switching transition for a dynamic microtubule.

Authors:  J S Aparna; Ranjith Padinhateeri; Dibyendu Das
Journal:  Sci Rep       Date:  2017-04-04       Impact factor: 4.379

10.  Mechanics and kinetics of dynamic instability.

Authors:  Thomas Ct Michaels; Shuo Feng; Haiyi Liang; L Mahadevan
Journal:  Elife       Date:  2020-05-11       Impact factor: 8.140

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