Literature DB >> 17963807

Gene surfing in expanding populations.

Oskar Hallatschek1, David R Nelson.   

Abstract

Large scale genomic surveys are partly motivated by the idea that the neutral genetic variation of a population may be used to reconstruct its migration history. However, our ability to trace back the colonization pathways of a species from their genetic footprints is limited by our understanding of the genetic consequences of a range expansion. Here, we study, by means of simulations and analytical methods, the neutral dynamics of gene frequencies in an asexual population undergoing a continual range expansion in one dimension. During such a colonization period, lineages can fix at the wave front by means of a "surfing" mechanism [Edmonds, C.A., Lillie, A.S., Cavalli-Sforza, L.L., 2004. Mutations arising in the wave front of an expanding population. Proc. Natl. Acad. Sci. 101, 975-979]. We quantify this phenomenon in terms of (i) the spatial distribution of lineages that reach fixation and, closely related, (ii) the continual loss of genetic diversity (heterozygosity) at the wave front, characterizing the approach to fixation. Our stochastic simulations show that an effective population size can be assigned to the wave that controls the (observable) gradient in heterozygosity left behind the colonization process. This effective population size is markedly higher in the presence of cooperation between individuals ("pushed waves") than when individuals proliferate independently ("pulled waves"), and increases only sub-linearly with deme size. To explain these and other findings, we develop a versatile analytical approach, based on the physics of reaction-diffusion systems, that yields simple predictions for any deterministic population dynamics. Our analytical theory compares well with the simulation results for pushed waves, but is less accurate in the case of pulled waves when stochastic fluctuations in the tip of the wave are important.

Mesh:

Year:  2007        PMID: 17963807     DOI: 10.1016/j.tpb.2007.08.008

Source DB:  PubMed          Journal:  Theor Popul Biol        ISSN: 0040-5809            Impact factor:   1.570


  90 in total

1.  Exploring neutral and adaptive processes in expanding populations of gilthead sea bream, Sparus aurata L., in the North-East Atlantic.

Authors:  I Coscia; E Vogiatzi; G Kotoulas; C S Tsigenopoulos; S Mariani
Journal:  Heredity (Edinb)       Date:  2011-11-30       Impact factor: 3.821

2.  Serial founder effects during range expansion: a spatial analog of genetic drift.

Authors:  Montgomery Slatkin; Laurent Excoffier
Journal:  Genetics       Date:  2012-02-23       Impact factor: 4.562

3.  Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations.

Authors:  Benjamin H Good; Igor M Rouzine; Daniel J Balick; Oskar Hallatschek; Michael M Desai
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-27       Impact factor: 11.205

4.  Density-regulated population dynamics and conditional dispersal alter the fate of mutations occurring at the front of an expanding population.

Authors:  T Münkemüller; M J Travis; O J Burton; K Schiffers; K Johst
Journal:  Heredity (Edinb)       Date:  2010-08-18       Impact factor: 3.821

5.  The noisy edge of traveling waves.

Authors:  Oskar Hallatschek
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

Review 6.  Nuclear and genome dynamics in multinucleate ascomycete fungi.

Authors:  Marcus Roper; Chris Ellison; John W Taylor; N Louise Glass
Journal:  Curr Biol       Date:  2011-09-27       Impact factor: 10.834

7.  A quantitative test of population genetics using spatiogenetic patterns in bacterial colonies.

Authors:  Kirill S Korolev; João B Xavier; David R Nelson; Kevin R Foster
Journal:  Am Nat       Date:  2011-08-19       Impact factor: 3.926

8.  Collective Fluctuations in the Dynamics of Adaptation and Other Traveling Waves.

Authors:  Oskar Hallatschek; Lukas Geyrhofer
Journal:  Genetics       Date:  2016-01-27       Impact factor: 4.562

9.  Allee effect promotes diversity in traveling waves of colonization.

Authors:  Lionel Roques; Jimmy Garnier; François Hamel; Etienne K Klein
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-18       Impact factor: 11.205

10.  Speed of invasion of an expanding population by a horizontally transmitted trait.

Authors:  Juan Venegas-Ortiz; Rosalind J Allen; Martin R Evans
Journal:  Genetics       Date:  2013-12-02       Impact factor: 4.562

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