Literature DB >> 22126850

Exploring neutral and adaptive processes in expanding populations of gilthead sea bream, Sparus aurata L., in the North-East Atlantic.

I Coscia1, E Vogiatzi, G Kotoulas, C S Tsigenopoulos, S Mariani.   

Abstract

Recent studies in empirical population genetics have highlighted the importance of taking into account both neutral and adaptive genetic variation in characterizing microevolutionary dynamics. Here, we explore the genetic population structure and the footprints of selection in four populations of the warm-temperate coastal fish, the gilthead sea bream (Sparus aurata), whose recent northward expansion has been linked to climate change. Samples were collected at four Atlantic locations, including Spain, Portugal, France and the South of Ireland, and genetically assayed using a suite of species-specific markers, including 15 putatively neutral microsatellites and 23 expressed sequence tag-linked markers, as well as a portion of the mitochondrial DNA (mtDNA) control region. Two of the putatively neutral markers, Bld-10 and Ad-10, bore signatures of strong directional selection, particularly in the newly established Irish population, although the potential 'surfing effect' of rare alleles at the edge of the expansion front was also considered. Analyses after the removal of these loci suggest low but significant population structure likely affected by some degree of gene flow counteracting random genetic drift. No signal of historic divergence was detected at mtDNA. BLAST searches conducted with all 38 markers used failed to identify specific genomic regions associated to adaptive functions. However, the availability of genomic resources for this commercially valuable species is rapidly increasing, bringing us closer to the understanding of the interplay between selective and neutral evolutionary forces, shaping population divergence of an expanding species in a heterogeneous milieu.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22126850      PMCID: PMC3331784          DOI: 10.1038/hdy.2011.120

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.821


  71 in total

Review 1.  Climate extremes: observations, modeling, and impacts.

Authors:  D R Easterling; G A Meehl; C Parmesan; S A Changnon; T R Karl; L O Mearns
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

2.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

Authors:  Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

3.  New insights from fine-scale spatial genetic structure analyses in plant populations.

Authors:  X Vekemans; O J Hardy
Journal:  Mol Ecol       Date:  2004-04       Impact factor: 6.185

4.  Climate change and distribution shifts in marine fishes.

Authors:  Allison L Perry; Paula J Low; Jim R Ellis; John D Reynolds
Journal:  Science       Date:  2005-05-12       Impact factor: 47.728

Review 5.  Limits to evolution at range margins: when and why does adaptation fail?

Authors:  Jon R Bridle; Timothy H Vines
Journal:  Trends Ecol Evol       Date:  2006-11-20       Impact factor: 17.712

Review 6.  The molecular ecologist's guide to expressed sequence tags.

Authors:  Amy Bouck; Todd Vision
Journal:  Mol Ecol       Date:  2007-03       Impact factor: 6.185

7.  Surfing during population expansions promotes genetic revolutions and structuration.

Authors:  Laurent Excoffier; Nicolas Ray
Journal:  Trends Ecol Evol       Date:  2008-05-24       Impact factor: 17.712

8.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

9.  Expressed sequence tag-linked microsatellites as a source of gene-associated polymorphisms for detecting signatures of divergent selection in atlantic salmon (Salmo salar L.).

Authors:  Anti Vasemägi; Jan Nilsson; Craig R Primmer
Journal:  Mol Biol Evol       Date:  2005-02-02       Impact factor: 16.240

10.  Discord in the family Sparidae (Teleostei): divergent phylogeographical patterns across the Atlantic-Mediterranean divide.

Authors:  L Bargelloni; J A Alarcon; M C Alvarez; E Penzo; A Magoulas; C Reis; T Patarnello
Journal:  J Evol Biol       Date:  2003-11       Impact factor: 2.411

View more
  9 in total

1.  Genetic analysis of population differentiation and adaptation in Leuciscus waleckii.

Authors:  Yumei Chang; Ran Tang; Xiaowen Sun; Liqun Liang; Jinping Chen; Jinfeng Huang; Xinjie Dou; Ran Tao
Journal:  Genetica       Date:  2013-10-24       Impact factor: 1.082

2.  A comparative study of population genetic structure reveals patterns consistent with selection at functional microsatellites in common sunflower.

Authors:  Chathurani Ranathunge; Melody E Chimahusky; Mark E Welch
Journal:  Mol Genet Genomics       Date:  2022-07-04       Impact factor: 2.980

3.  Sex change and effective population size: implications for population genetic studies in marine fish.

Authors:  I Coscia; J Chopelet; R S Waples; B Q Mann; S Mariani
Journal:  Heredity (Edinb)       Date:  2016-08-10       Impact factor: 3.821

4.  Establishment of a coastal fish in the Azores: recent colonisation or sudden expansion of an ancient relict population?

Authors:  S Stefanni; R Castilho; M Sala-Bozano; J I Robalo; S M Francisco; R S Santos; N Marques; A Brito; V C Almada; S Mariani
Journal:  Heredity (Edinb)       Date:  2015-07-15       Impact factor: 3.821

5.  Comparison of the effectiveness of ISJ and SSR markers and detection of outlier loci in conservation genetics of Pulsatilla patens populations.

Authors:  Katarzyna Bilska; Monika Szczecińska
Journal:  PeerJ       Date:  2016-11-02       Impact factor: 2.984

6.  Ecological and evolutionary consequences of alternative sex-change pathways in fish.

Authors:  C Benvenuto; I Coscia; J Chopelet; M Sala-Bozano; S Mariani
Journal:  Sci Rep       Date:  2017-08-22       Impact factor: 4.379

7.  Spatial connectivity pattern of expanding gilthead seabream populations and its interactions with aquaculture sites: a combined population genetic and physical modelling approach.

Authors:  Iva Žužul; Tanja Šegvić-Bubić; Igor Talijančić; Tomislav Džoić; Ivana Lepen Pleić; Gordana Beg Paklar; Stjepan Ivatek-Šahdan; Ivan Katavić; Leon Grubišić
Journal:  Sci Rep       Date:  2019-10-11       Impact factor: 4.379

8.  Genome-wide analysis clarifies the population genetic structure of wild gilthead sea bream (Sparus aurata).

Authors:  Francesco Maroso; Konstantinos Gkagkavouzis; Sabina De Innocentiis; Jasmien Hillen; Fernanda do Prado; Nikoleta Karaiskou; John Bernard Taggart; Adrian Carr; Einar Nielsen; Alexandros Triantafyllidis; Luca Bargelloni
Journal:  PLoS One       Date:  2021-01-11       Impact factor: 3.240

9.  Signatures of selection in the three-spined stickleback along a small-scale brackish water - freshwater transition zone.

Authors:  Nellie Konijnendijk; Takahito Shikano; Dorien Daneels; Filip A M Volckaert; Joost A M Raeymaekers
Journal:  Ecol Evol       Date:  2015-09-04       Impact factor: 2.912

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.