Literature DB >> 17963718

Repeat-protein folding: new insights into origins of cooperativity, stability, and topology.

Ellen Kloss1, Naomi Courtemanche, Doug Barrick.   

Abstract

Although our understanding of globular protein folding continues to advance, the irregular tertiary structures and high cooperativity of globular proteins complicates energetic dissection. Recently, proteins with regular, repetitive tertiary structures have been identified that sidestep limitations imposed by globular protein architecture. Here we review recent studies of repeat-protein folding. These studies uniquely advance our understanding of both the energetics and kinetics of protein folding. Equilibrium studies provide detailed maps of local stabilities, access to energy landscapes, insights into cooperativity, determination of nearest-neighbor interaction parameters using statistical thermodynamics, relationships between consensus sequences and repeat-protein stability. Kinetic studies provide insight into the influence of short-range topology on folding rates, the degree to which folding proceeds by parallel (versus localized) pathways, and the factors that select among multiple potential pathways. The recent application of force spectroscopy to repeat-protein unfolding is providing a unique route to test and extend many of these findings.

Mesh:

Year:  2007        PMID: 17963718      PMCID: PMC2474553          DOI: 10.1016/j.abb.2007.08.034

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  96 in total

Review 1.  What can we learn about protein folding from Ising-like models?

Authors:  V Muñoz
Journal:  Curr Opin Struct Biol       Date:  2001-04       Impact factor: 6.809

2.  Origin of unusual phi-values in protein folding: evidence against specific nucleation sites.

Authors:  Ignacio E Sánchez; Thomas Kiefhaber
Journal:  J Mol Biol       Date:  2003-12-12       Impact factor: 5.469

3.  Design of stable alpha-helical arrays from an idealized TPR motif.

Authors:  Ewan R G Main; Yong Xiong; Melanie J Cocco; Luca D'Andrea; Lynne Regan
Journal:  Structure       Date:  2003-05       Impact factor: 5.006

4.  In search of the hair-cell gating spring elastic properties of ankyrin and cadherin repeats.

Authors:  Marcos Sotomayor; David P Corey; Klaus Schulten
Journal:  Structure       Date:  2005-04       Impact factor: 5.006

Review 5.  RNA and protein folding: common themes and variations.

Authors:  D Thirumalai; Changbong Hyeon
Journal:  Biochemistry       Date:  2005-04-05       Impact factor: 3.162

Review 6.  Have we found the tip link, transduction channel, and gating spring of the hair cell?

Authors:  Peter G Gillespie; Rachel A Dumont; Bechara Kachar
Journal:  Curr Opin Neurobiol       Date:  2005-08       Impact factor: 6.627

7.  Enhancing the stability and folding rate of a repeat protein through the addition of consensus repeats.

Authors:  Katherine W Tripp; Doug Barrick
Journal:  J Mol Biol       Date:  2006-10-06       Impact factor: 5.469

8.  Effect of point mutations on the folding of globular proteins.

Authors:  C R Matthews
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

9.  Structure of the transition state for the folding/unfolding of the barley chymotrypsin inhibitor 2 and its implications for mechanisms of protein folding.

Authors:  D E Otzen; L S Itzhaki; N F elMasry; S E Jackson; A R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-25       Impact factor: 11.205

10.  High-affinity binders selected from designed ankyrin repeat protein libraries.

Authors:  H Kaspar Binz; Patrick Amstutz; Andreas Kohl; Michael T Stumpp; Christophe Briand; Patrik Forrer; Markus G Grütter; Andreas Plückthun
Journal:  Nat Biotechnol       Date:  2004-04-18       Impact factor: 54.908

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  43 in total

1.  Modulation of the multistate folding of designed TPR proteins through intrinsic and extrinsic factors.

Authors:  J J Phillips; Y Javadi; C Millership; E R G Main
Journal:  Protein Sci       Date:  2012-03       Impact factor: 6.725

2.  Unique features of the folding landscape of a repeat protein revealed by pressure perturbation.

Authors:  Jean-Baptiste Rouget; Martin A Schroer; Christoph Jeworrek; Matthias Pühse; Jean-Louis Saldana; Yannick Bessin; Metin Tolan; Doug Barrick; Roland Winter; Catherine A Royer
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

Review 3.  Folding landscapes of ankyrin repeat proteins: experiments meet theory.

Authors:  Doug Barrick; Diego U Ferreiro; Elizabeth A Komives
Journal:  Curr Opin Struct Biol       Date:  2008-02       Impact factor: 6.809

4.  Folding thermodynamics and kinetics of the leucine-rich repeat domain of the virulence factor Internalin B.

Authors:  Naomi Courtemanche; Doug Barrick
Journal:  Protein Sci       Date:  2008-01       Impact factor: 6.725

5.  The capillarity picture and the kinetics of one-dimensional protein folding.

Authors:  Diego U Ferreiro; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-16       Impact factor: 11.205

6.  A theoretical model for the mechanical unfolding of repeat proteins.

Authors:  Dmitrii E Makarov
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

7.  Predicting repeat protein folding kinetics from an experimentally determined folding energy landscape.

Authors:  Timothy O Street; Doug Barrick
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

8.  Thermodynamics, kinetics, and salt dependence of folding of YopM, a large leucine-rich repeat protein.

Authors:  Ellen Kloss; Doug Barrick
Journal:  J Mol Biol       Date:  2008-09-04       Impact factor: 5.469

9.  Mapping the energy landscape of repeat proteins using NMR-detected hydrogen exchange.

Authors:  Aitziber L Cortajarena; Simon G J Mochrie; Lynne Regan
Journal:  J Mol Biol       Date:  2008-02-29       Impact factor: 5.469

10.  Biological regulation via ankyrin repeat folding.

Authors:  Doug Barrick
Journal:  ACS Chem Biol       Date:  2009-01-16       Impact factor: 5.100

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