Literature DB >> 19146478

Biological regulation via ankyrin repeat folding.

Doug Barrick1.   

Abstract

By mimicking the phosphorylation of p19(INK4d), a tumor suppressor containing five ankyrin repeats, the native state could be destabilized to such an extent that only a partially folded state is populated at physiological temperature. This partly folded state, which mimics an on-pathway folding intermediate lacking structure in ankyrin repeats 1 and 2, is more rapidly ubiquitinated than the parent construct. Thus, phosphorylation of p19(INK4d) is likely to regulate cell-cycle progression through both biochemical (proteasomal) and biophysical (folding and binding to cyclin-dependent kinases) mechanisms.

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Year:  2009        PMID: 19146478      PMCID: PMC2811253          DOI: 10.1021/cb900003f

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  21 in total

1.  Structure and stability of the ankyrin domain of the Drosophila Notch receptor.

Authors:  Mark E Zweifel; Daniel J Leahy; Frederick M Hughson; Doug Barrick
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

2.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

Review 3.  The ankyrin repeat as molecular architecture for protein recognition.

Authors:  Leila K Mosavi; Tobin J Cammett; Daniel C Desrosiers; Zheng-Yu Peng
Journal:  Protein Sci       Date:  2004-06       Impact factor: 6.725

Review 4.  Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling.

Authors:  Vladimir N Uversky; Christopher J Oldfield; A Keith Dunker
Journal:  J Mol Recognit       Date:  2005 Sep-Oct       Impact factor: 2.137

5.  Ubiquitin/proteasome-mediated degradation of p19INK4d determines its periodic expression during the cell cycle.

Authors:  M Thullberg; J Bartek; J Lukas
Journal:  Oncogene       Date:  2000-06-01       Impact factor: 9.867

6.  Stereochemistry of cooperative effects in haemoglobin.

Authors:  M F Perutz
Journal:  Nature       Date:  1970-11-21       Impact factor: 49.962

7.  Comparison of experimental binding data and theoretical models in proteins containing subunits.

Authors:  D E Koshland; G Némethy; D Filmer
Journal:  Biochemistry       Date:  1966-01       Impact factor: 3.162

Review 8.  Intrinsically unstructured proteins and their functions.

Authors:  H Jane Dyson; Peter E Wright
Journal:  Nat Rev Mol Cell Biol       Date:  2005-03       Impact factor: 94.444

9.  Conformational switch upon phosphorylation: human CDK inhibitor p19INK4d between the native and partially folded state.

Authors:  Christian Löw; Nadine Homeyer; Ulrich Weininger; Heinrich Sticht; Jochen Balbach
Journal:  ACS Chem Biol       Date:  2009-01-16       Impact factor: 5.100

10.  Crystal structure of the complex of the cyclin D-dependent kinase Cdk6 bound to the cell-cycle inhibitor p19INK4d.

Authors:  D H Brotherton; V Dhanaraj; S Wick; L Brizuela; P J Domaille; E Volyanik; X Xu; E Parisini; B O Smith; S J Archer; M Serrano; S L Brenner; T L Blundell; E D Laue
Journal:  Nature       Date:  1998-09-17       Impact factor: 49.962

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  4 in total

1.  Expanding the proteome: disordered and alternatively folded proteins.

Authors:  H Jane Dyson
Journal:  Q Rev Biophys       Date:  2011-07-01       Impact factor: 5.318

2.  V-1 regulates capping protein activity in vivo.

Authors:  Goeh Jung; Christopher J Alexander; Xufeng S Wu; Grzegorz Piszczek; Bi-Chang Chen; Eric Betzig; John A Hammer
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-10       Impact factor: 11.205

3.  Phosphorylation-induced unfolding regulates p19INK4d during the human cell cycle.

Authors:  Amit Kumar; Mohanraj Gopalswamy; Annika Wolf; David J Brockwell; Mechthild Hatzfeld; Jochen Balbach
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-12       Impact factor: 11.205

4.  Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system.

Authors:  Mainak Guharoy; Pallab Bhowmick; Mohamed Sallam; Peter Tompa
Journal:  Nat Commun       Date:  2016-01-06       Impact factor: 14.919

  4 in total

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