Literature DB >> 11297930

What can we learn about protein folding from Ising-like models?

V Muñoz1.   

Abstract

Ising-like models have been remarkably successful in reproducing all the experimental data available on the equilibrium and kinetics of secondary structure formation in short peptides. Over the past two years, very similar models have been used to predict the folding of complete proteins, with encouraging results. Although Ising-like models are probably too simple to describe all aspects of protein folding, the results obtained so far indicate that they can play a critical role in the study of protein folding by bridging the gap between experiment and more detailed theoretical approaches.

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Year:  2001        PMID: 11297930     DOI: 10.1016/s0959-440x(00)00192-5

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  17 in total

1.  How fast is protein hydrophobic collapse?

Authors:  Mourad Sadqi; Lisa J Lapidus; Victor Muñoz
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-06       Impact factor: 11.205

2.  Exploring protein-folding ensembles: a variable-barrier model for the analysis of equilibrium unfolding experiments.

Authors:  Victor Muñoz; Jose M Sanchez-Ruiz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-09       Impact factor: 11.205

Review 3.  Repeat-protein folding: new insights into origins of cooperativity, stability, and topology.

Authors:  Ellen Kloss; Naomi Courtemanche; Doug Barrick
Journal:  Arch Biochem Biophys       Date:  2007-09-15       Impact factor: 4.013

4.  Elucidating quantitative stability/flexibility relationships within thioredoxin and its fragments using a distance constraint model.

Authors:  Donald J Jacobs; Dennis R Livesay; Jeremy Hules; Maria Luisa Tasayco
Journal:  J Mol Biol       Date:  2006-02-24       Impact factor: 5.469

5.  Folding domain B of protein A on a dynamically partitioned free energy landscape.

Authors:  Erik D Nelson; Nick V Grishin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-29       Impact factor: 11.205

6.  Large-scale modulation of thermodynamic protein folding barriers linked to electrostatics.

Authors:  Oyvind Halskau; Raul Perez-Jimenez; Beatriz Ibarra-Molero; Jarl Underhaug; Victor Muñoz; Aurora Martinez; Jose M Sanchez-Ruiz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-11       Impact factor: 11.205

7.  Ensemble properties of network rigidity reveal allosteric mechanisms.

Authors:  Donald J Jacobs; Dennis R Livesay; James M Mottonen; Oleg K Vorov; Andrei Y Istomin; Deeptak Verma
Journal:  Methods Mol Biol       Date:  2012

Review 8.  Ensemble-based methods for describing protein dynamics.

Authors:  Donald J Jacobs
Journal:  Curr Opin Pharmacol       Date:  2010-10-19       Impact factor: 5.547

9.  Conformational Entropy of an Ideal Cross-Linking Polymer Chain.

Authors:  Oleg K Vorov; Dennis R Livesay; Donald J Jacobs
Journal:  Entropy (Basel)       Date:  2008-09-20       Impact factor: 2.524

10.  Analysis of repeat-protein folding using nearest-neighbor statistical mechanical models.

Authors:  Tural Aksel; Doug Barrick
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

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