Literature DB >> 17927218

Determination of the substrate binding mode to the active site iron of (S)-2-hydroxypropylphosphonic acid epoxidase using 17O-enriched substrates and substrate analogues.

Feng Yan1, Sung-Ju Moon, Pinghua Liu, Zongbao Zhao, John D Lipscomb, Aimin Liu, Hung-wen Liu.   

Abstract

(S)-2-Hydroxypropylphosphonic acid epoxidase (HppE) is an O2-dependent, nonheme Fe(II)-containing oxidase that converts (S)-2-hydroxypropylphosphonic acid ((S)-HPP) to the regio- and enantiomerically specific epoxide, fosfomycin. Use of (R)-2-hydroxypropylphosphonic acid ((R)-HPP) yields the 2-keto-adduct rather than the epoxide. Here we report the chemical synthesis of a range of HPP analogues designed to probe the basis for this specificity. In past studies, NO has been used as an O2 surrogate to provide an EPR probe of the Fe(II) environment. These studies suggest that O2 binds to the iron, and substrates bind in a single orientation that strongly perturbs the iron environment. Recently, the X-ray crystal structure showed direct binding of the substrate to the iron, but both monodentate (via the phosphonate) and chelated (via the hydroxyl and phosphonate) orientations were observed. In the current study, hyperfine broadening of the homogeneous S = 3/2 EPR spectrum of the HppE-NO-HPP complex was observed when either the hydroxyl or the phosphonate group of HPP was enriched with 17O (I = 5/2). These results indicate that both functional groups of HPP bind to Fe(II) ion at the same time as NO, suggesting that the chelated substrate binding mode dominates in solution. (R)- and (S)-analogue compounds that maintained the core structure of HPP but added bulky terminal groups were turned over to give products analogous to those from (R)- and (S)-HPP, respectively. In contrast, substrate analogues lacking either the phosphonate or hydroxyl group were not turned over. Elongation of the carbon chain between the hydroxyl and phosphonate allowed binding to the iron in a variety of orientations to give keto and diol products at positions determined by the hydroxyl substituent, but no stable epoxide was formed. These studies show the importance of the Fe(II)-substrate chelate structure to active antibiotic formation. This fixed orientation may align the substrate next to the iron-bound activated oxygen species thought to mediate hydrogen atom abstraction from the nearest substrate carbon.

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Year:  2007        PMID: 17927218      PMCID: PMC2780580          DOI: 10.1021/bi701370e

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  30 in total

1.  Protein purification and function assignment of the epoxidase catalyzing the formation of fosfomycin.

Authors:  P Liu; K Murakami; T Seki; X He; S M Yeung; T Kuzuyama; H Seto; H Liu
Journal:  J Am Chem Soc       Date:  2001-05-16       Impact factor: 15.419

2.  Heme-Containing Oxygenases.

Authors:  Masanori Sono; Mark P. Roach; Eric D. Coulter; John H. Dawson
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Structure and reactivity of hydroxypropylphosphonic acid epoxidase in fosfomycin biosynthesis by a cation- and flavin-dependent mechanism.

Authors:  Karen McLuskey; Scott Cameron; Friedrich Hammerschmidt; William N Hunter
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-26       Impact factor: 11.205

4.  Studies on the biosynthesis of fosfomycin. 2. Conversion of 2-hydroxypropyl-phosphonic acid to fosfomycin by blocked mutants of Streptomyces wedmorensis.

Authors:  H Seto; T Hidaka; T Kuzuyama; S Shibahara; T Usui; O Sakanaka; S Imai
Journal:  J Antibiot (Tokyo)       Date:  1991-11       Impact factor: 2.649

5.  Structural insight into antibiotic fosfomycin biosynthesis by a mononuclear iron enzyme.

Authors:  Luke J Higgins; Feng Yan; Pinghua Liu; Hung-wen Liu; Catherine L Drennan
Journal:  Nature       Date:  2005-07-13       Impact factor: 49.962

6.  Biosynthesis of fosfomycin, re-examination and re-confirmation of a unique Fe(II)- and NAD(P)H-dependent epoxidation reaction.

Authors:  Feng Yan; Jeffrey W Munos; Pinghua Liu; Hung-wen Liu
Journal:  Biochemistry       Date:  2006-09-26       Impact factor: 3.162

7.  17O-water and cyanide ligation by the active site iron of protocatechuate 3,4-dioxygenase. Evidence for displaceable ligands in the native enzyme and in complexes with inhibitors or transition state analogs.

Authors:  J W Whittaker; J D Lipscomb
Journal:  J Biol Chem       Date:  1984-04-10       Impact factor: 5.157

8.  EPR and Mössbauer studies of protocatechuate 4,5-dioxygenase. Characterization of a new Fe2+ environment.

Authors:  D M Arciero; J D Lipscomb; B H Huynh; T A Kent; E Münck
Journal:  J Biol Chem       Date:  1983-12-25       Impact factor: 5.157

9.  Nitric oxide binding at the mononuclear active site of reduced Pyrococcus furiosus superoxide reductase.

Authors:  Michael D Clay; Christopher A Cosper; Francis E Jenney; Michael W W Adams; Michael K Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-24       Impact factor: 11.205

10.  Biochemical and spectroscopic studies on (S)-2-hydroxypropylphosphonic acid epoxidase: a novel mononuclear non-heme iron enzyme.

Authors:  Pinghua Liu; Aimin Liu; Feng Yan; Matt D Wolfe; John D Lipscomb; Hung-wen Liu
Journal:  Biochemistry       Date:  2003-10-14       Impact factor: 3.162

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  14 in total

Review 1.  Enzymatic chemistry of cyclopropane, epoxide, and aziridine biosynthesis.

Authors:  Christopher J Thibodeaux; Wei-chen Chang; Hung-wen Liu
Journal:  Chem Rev       Date:  2011-10-21       Impact factor: 60.622

2.  Crystal Structures of L-DOPA Dioxygenase from Streptomyces sclerotialus.

Authors:  Yifan Wang; Inchul Shin; Yizhi Fu; Keri L Colabroy; Aimin Liu
Journal:  Biochemistry       Date:  2019-06-25       Impact factor: 3.162

3.  Substrate Conformation Correlates with the Outcome of Hyoscyamine 6β-Hydroxylase Catalyzed Oxidation Reactions.

Authors:  Richiro Ushimaru; Mark W Ruszczycky; Wei-Chen Chang; Feng Yan; Yung-Nan Liu; Hung-Wen Liu
Journal:  J Am Chem Soc       Date:  2018-06-11       Impact factor: 15.419

4.  1-Aminocyclopropane-1-carboxylic acid oxidase: insight into cofactor binding from experimental and theoretical studies.

Authors:  Lydie Brisson; Nadia El Bakkali-Taheri; Michel Giorgi; Antoine Fadel; József Kaizer; Marius Réglier; Thierry Tron; El Hassan Ajandouz; A Jalila Simaan
Journal:  J Biol Inorg Chem       Date:  2012-06-19       Impact factor: 3.358

Review 5.  Structure and mechanism of enzymes involved in biosynthesis and breakdown of the phosphonates fosfomycin, dehydrophos, and phosphinothricin.

Authors:  Satish K Nair; Wilfred A van der Donk
Journal:  Arch Biochem Biophys       Date:  2010-09-18       Impact factor: 4.013

6.  Reaction of HppE with substrate analogues: evidence for carbon-phosphorus bond cleavage by a carbocation rearrangement.

Authors:  Wei-chen Chang; Steven O Mansoorabadi; Hung-wen Liu
Journal:  J Am Chem Soc       Date:  2013-05-23       Impact factor: 15.419

Review 7.  Versatility of biological non-heme Fe(II) centers in oxygen activation reactions.

Authors:  Elena G Kovaleva; John D Lipscomb
Journal:  Nat Chem Biol       Date:  2008-03       Impact factor: 15.040

8.  Evidence for radical-mediated catalysis by HppE: a study using cyclopropyl and methylenecyclopropyl substrate analogues.

Authors:  Hui Huang; Wei-chen Chang; Pei-Jing Pai; Anthony Romo; Steven O Mansoorabadi; David H Russell; Hung-wen Liu
Journal:  J Am Chem Soc       Date:  2012-09-24       Impact factor: 15.419

Review 9.  Biosynthesis of phosphonic and phosphinic acid natural products.

Authors:  William W Metcalf; Wilfred A van der Donk
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

10.  Purification and characterization of the epoxidase catalyzing the formation of fosfomycin from Pseudomonas syringae.

Authors:  Jeffrey W Munos; Sung-Ju Moon; Steven O Mansoorabadi; Weichen Chang; Lin Hong; Feng Yan; Aimin Liu; Hung-Wen Liu
Journal:  Biochemistry       Date:  2008-07-26       Impact factor: 3.162

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