Literature DB >> 6323476

17O-water and cyanide ligation by the active site iron of protocatechuate 3,4-dioxygenase. Evidence for displaceable ligands in the native enzyme and in complexes with inhibitors or transition state analogs.

J W Whittaker, J D Lipscomb.   

Abstract

Hyperfine broadening is observable in the EPR spectrum of Brevibacterium fuscum protocatechuate 3,4-dioxygenase after lyophilization and rehydration in 17O-enriched water, demonstrating H2O ligation to the active site iron. Lack of detectable broadening in the sharp features of the spectra of three substrate complexes suggests that H2O is displaced by substrate. Water is bound in the monodentate complex with the competitive inhibitor 3-hydroxybenzoate which binds directly to the iron showing that two iron ligation sites can be occupied by nonprotein ligands. Ketonized substrate analogs which mimic a proposed transition state of the reaction cycle, 2-hydroxyisonicotinic acid N-oxide (2-OHINO) and 6-hydroxynicotinic acid N-oxide (6-OH NNO), have H2O bound in their final, bleached enzyme complexes, suggesting that these complexes are also monodentate. In contrast, a transient, initial complex of 6-OH NNO which is spectrally similar to the substrate complex, apparently does not have H2O bound. Cyanide binding occurs in two steps. The active site Fe3+ of the initial, rapidly formed, violet complex is high spin while that of the second, slowly formed, green complex is low spin; a unique state for mononuclear non-heme iron enzymes. The data suggest that the Fe-CN- and Fe-(CN-)2 complexes form sequentially. CN- binds to enzyme complexes with 2-OH INO and 6-OH NNO in one step to yield high spin Fe3+ species. In contrast, preformed substrate complexes prevent CN- binding. CN- binding eliminates the broadening due to 17O-water in the EPR spectra of both native enzyme and the enzyme-ketonized analog complexes. A model is proposed in which H2O is displaced by bidentate binding of the substrate but can potentially rebind after a subsequent substrate ketonization. The proximity of the vacatable H2O-binding site of the iron to the site of oxygen insertion suggests, however, that this site may serve to stabilize an oxygenated intermediate during the reaction cycle.

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Year:  1984        PMID: 6323476

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  8 in total

1.  Life in a sea of oxygen.

Authors:  John D Lipscomb
Journal:  J Biol Chem       Date:  2014-04-15       Impact factor: 5.157

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Authors:  E L Neidle; C Hartnett; S Bonitz; L N Ornston
Journal:  J Bacteriol       Date:  1988-10       Impact factor: 3.490

3.  Occurrence of two different forms of protocatechuate 3,4-dioxygenase in a Moraxella sp.

Authors:  R Sterjiades; J Pelmont
Journal:  Appl Environ Microbiol       Date:  1989-02       Impact factor: 4.792

4.  Cloning, sequencing, and expression of the Pseudomonas putida protocatechuate 3,4-dioxygenase genes.

Authors:  R W Frazee; D M Livingston; D C LaPorte; J D Lipscomb
Journal:  J Bacteriol       Date:  1993-10       Impact factor: 3.490

5.  Purification and characterization of protocatechuate 2,3-dioxygenase from Bacillus macerans: a new extradiol catecholic dioxygenase.

Authors:  S A Wolgel; J E Dege; P E Perkins-Olson; C H Jaurez-Garcia; R L Crawford; E Münck; J D Lipscomb
Journal:  J Bacteriol       Date:  1993-07       Impact factor: 3.490

6.  Determination of the substrate binding mode to the active site iron of (S)-2-hydroxypropylphosphonic acid epoxidase using 17O-enriched substrates and substrate analogues.

Authors:  Feng Yan; Sung-Ju Moon; Pinghua Liu; Zongbao Zhao; John D Lipscomb; Aimin Liu; Hung-wen Liu
Journal:  Biochemistry       Date:  2007-10-10       Impact factor: 3.162

7.  A Long-Lived Fe(III)-(Hydroperoxo) Intermediate in the Active H200C Variant of Homoprotocatechuate 2,3-Dioxygenase: Characterization by Mössbauer, Electron Paramagnetic Resonance, and Density Functional Theory Methods.

Authors:  Katlyn K Meier; Melanie S Rogers; Elena G Kovaleva; Michael M Mbughuni; Emile L Bominaar; John D Lipscomb; Eckard Münck
Journal:  Inorg Chem       Date:  2015-10-20       Impact factor: 5.165

8.  1-Aminocyclopropane-1-carboxylic acid oxidase reaction mechanism and putative post-translational activities of the ACCO protein.

Authors:  David R Dilley; Zhenyong Wang; Deena K Kadirjan-Kalbach; Fillipos Ververidis; Randolph Beaudry; Kallaithe Padmanabhan
Journal:  AoB Plants       Date:  2013-10-25       Impact factor: 3.276

  8 in total

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