Literature DB >> 20622014

Negative regulation of meiotic gene expression by the nuclear poly(a)-binding protein in fission yeast.

Olivier St-André1, Caroline Lemieux, Audrey Perreault, Daniel H Lackner, Jürg Bähler, François Bachand.   

Abstract

Meiosis is a cellular differentiation process in which hundreds of genes are temporally induced. Because the expression of meiotic genes during mitosis is detrimental to proliferation, meiotic genes must be negatively regulated in the mitotic cell cycle. Yet, little is known about mechanisms used by mitotic cells to repress meiosis-specific genes. Here we show that the poly(A)-binding protein Pab2, the fission yeast homolog of mammalian PABPN1, controls the expression of several meiotic transcripts during mitotic division. Our results from chromatin immunoprecipitation and promoter-swapping experiments indicate that Pab2 controls meiotic genes post-transcriptionally. Consistently, we show that the nuclear exosome complex cooperates with Pab2 in the negative regulation of meiotic genes. We also found that Pab2 plays a role in the RNA decay pathway orchestrated by Mmi1, a previously described factor that functions in the post-transcriptional elimination of meiotic transcripts. Our results support a model in which Mmi1 selectively targets meiotic transcripts for degradation via Pab2 and the exosome. Our findings have therefore uncovered a mode of gene regulation whereby a poly(A)-binding protein promotes RNA degradation in the nucleus to prevent untimely expression.

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Year:  2010        PMID: 20622014      PMCID: PMC2934653          DOI: 10.1074/jbc.M110.150748

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  57 in total

1.  Significance analysis of microarrays applied to the ionizing radiation response.

Authors:  V G Tusher; R Tibshirani; G Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-17       Impact factor: 11.205

2.  Identification of a regulated pathway for nuclear pre-mRNA turnover.

Authors:  C Bousquet-Antonelli; C Presutti; D Tollervey
Journal:  Cell       Date:  2000-09-15       Impact factor: 41.582

3.  Ski7p G protein interacts with the exosome and the Ski complex for 3'-to-5' mRNA decay in yeast.

Authors:  Y Araki; S Takahashi; T Kobayashi; H Kajiho; S Hoshino; T Katada
Journal:  EMBO J       Date:  2001-09-03       Impact factor: 11.598

4.  Comprehensive isolation of meiosis-specific genes identifies novel proteins and unusual non-coding transcripts in Schizosaccharomyces pombe.

Authors:  T Watanabe; K Miyashita; T T Saito; T Yoneki; Y Kakihara; K Nabeshima; Y A Kishi; C Shimoda; H Nojima
Journal:  Nucleic Acids Res       Date:  2001-06-01       Impact factor: 16.971

5.  Function of the ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA.

Authors:  A van Hoof; R R Staples; R E Baker; R Parker
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

6.  The core meiotic transcriptome in budding yeasts.

Authors:  M Primig; R M Williams; E A Winzeler; G G Tevzadze; A R Conway; S Y Hwang; R W Davis; R E Esposito
Journal:  Nat Genet       Date:  2000-12       Impact factor: 38.330

7.  Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs.

Authors:  A van Hoof; P Lennertz; R Parker
Journal:  Mol Cell Biol       Date:  2000-01       Impact factor: 4.272

8.  Quality control of mRNA 3'-end processing is linked to the nuclear exosome.

Authors:  P Hilleren; T McCarthy; M Rosbash; R Parker; T H Jensen
Journal:  Nature       Date:  2001-10-04       Impact factor: 49.962

9.  Importance of polyadenylation in the selective elimination of meiotic mRNAs in growing S. pombe cells.

Authors:  Soichiro Yamanaka; Akira Yamashita; Yuriko Harigaya; Ryo Iwata; Masayuki Yamamoto
Journal:  EMBO J       Date:  2010-05-28       Impact factor: 11.598

10.  Processing of 3'-extended read-through transcripts by the exosome can generate functional mRNAs.

Authors:  Claire Torchet; Cecile Bousquet-Antonelli; Laura Milligan; Emma Thompson; Joanna Kufel; David Tollervey
Journal:  Mol Cell       Date:  2002-06       Impact factor: 17.970

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  55 in total

1.  New romance between RNA degradation pathways: Mmi1 and RNAi meet on heterochromatic islands.

Authors:  Lærke Rebekka Holm; Geneviève Thon
Journal:  EMBO J       Date:  2012-05-01       Impact factor: 11.598

2.  A dominant role for meiosis-specific 3' RNA processing in controlling expression of a fission yeast cyclin gene.

Authors:  Kristine Potter; Nicole Cremona; Sham Sunder; Jo Ann Wise
Journal:  RNA       Date:  2012-05-30       Impact factor: 4.942

3.  Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6.

Authors:  Aurélie Lardenois; Yuchen Liu; Thomas Walther; Frédéric Chalmel; Bertrand Evrard; Marina Granovskaia; Angela Chu; Ronald W Davis; Lars M Steinmetz; Michael Primig
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

4.  An antisense RNA-mediated mechanism eliminates a meiosis-specific copper-regulated transcript in mitotic cells.

Authors:  Vincent Normant; Jude Beaudoin; Simon Labbé
Journal:  J Biol Chem       Date:  2015-07-30       Impact factor: 5.157

Review 5.  The regulation and functions of the nuclear RNA exosome complex.

Authors:  Cornelia Kilchert; Sina Wittmann; Lidia Vasiljeva
Journal:  Nat Rev Mol Cell Biol       Date:  2016-01-04       Impact factor: 94.444

6.  Conserved factor Dhp1/Rat1/Xrn2 triggers premature transcription termination and nucleates heterochromatin to promote gene silencing.

Authors:  Venkata R Chalamcharla; H Diego Folco; Jothy Dhakshnamoorthy; Shiv I S Grewal
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-02       Impact factor: 11.205

Review 7.  The multitasking polyA tail: nuclear RNA maturation, degradation and export.

Authors:  Agnieszka Tudek; Marta Lloret-Llinares; Torben Heick Jensen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

8.  Targeting the nuclear RNA exosome: Poly(A) binding proteins enter the stage.

Authors:  Nicola Meola; Torben Heick Jensen
Journal:  RNA Biol       Date:  2017-04-19       Impact factor: 4.652

9.  Multiple Transcriptional and Post-transcriptional Pathways Collaborate to Control Sense and Antisense RNAs of Tf2 Retroelements in Fission Yeast.

Authors:  Pierre-Luc Mallet; Marc Larochelle; François Bachand
Journal:  Genetics       Date:  2016-12-22       Impact factor: 4.562

10.  Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.

Authors:  Nathan N Lee; Venkata R Chalamcharla; Francisca Reyes-Turcu; Sameet Mehta; Martin Zofall; Vanivilasini Balachandran; Jothy Dhakshnamoorthy; Nitika Taneja; Soichiro Yamanaka; Ming Zhou; Shiv I S Grewal
Journal:  Cell       Date:  2013-11-07       Impact factor: 41.582

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