Literature DB >> 21084869

To polyadenylate or to deadenylate: that is the question.

Xiaokan Zhang1, Anders Virtanen, Frida E Kleiman.   

Abstract

mRNA polyadenylation and deadenylation are important processes that allow rapid regulation of gene expression in response to different cellular conditions. Almost all eukaryotic mRNA precursors undergo a co-transcriptional cleavage followed by polyadenylation at the 3' end. After the signals are selected, polyadenylation occurs to full extent, suggesting that this first round of polyadenylation is a default modification for most mRNAs. However, the length of these poly(A) tails changes by the activation of deadenylation, which might regulate gene expression by affecting mRNA stability, mRNA transport, or translation initiation. The mechanisms behind deadenylation activation are highly regulated and associated with cellular conditions such as development, mRNA surveillance, DNA damage response, cell differentiation and cancer. After deadenylation, depending on the cellular response, some mRNAs might undergo an extension of the poly(A) tail or degradation. The polyadenylation/deadenylation machinery itself, miRNAs, or RNA binding factors are involved in the regulation of polyadenylation/deadenylation. Here, we review the mechanistic connections between polyadenylation and deadenylation and how the two processes are regulated in different cellular conditions. It is our conviction that further studies of the interplay between polyadenylation and deadenylation will provide critical information required for a mechanistic understanding of several diseases, including cancer development.

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Year:  2010        PMID: 21084869      PMCID: PMC3048043          DOI: 10.4161/cc.9.22.13887

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  170 in total

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2.  Drosophila Orb2 targets genes involved in neuronal growth, synapse formation, and protein turnover.

Authors:  Tomoko Mastushita-Sakai; Erica White-Grindley; Jessica Samuelson; Chris Seidel; Kausik Si
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

Review 3.  Connections between 3'-end processing and DNA damage response.

Authors:  Murat A Cevher; Frida E Kleiman
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-05-25       Impact factor: 9.957

4.  Lin-28B expression promotes transformation and invasion in human hepatocellular carcinoma.

Authors:  Yun-Chu Wang; Yu-Ling Chen; Ray-Hwang Yuan; Hung-Wei Pan; Wan-Ching Yang; Hey-Chi Hsu; Yung-Ming Jeng
Journal:  Carcinogenesis       Date:  2010-06-04       Impact factor: 4.944

5.  MAPKAP kinase 2 blocks tristetraprolin-directed mRNA decay by inhibiting CAF1 deadenylase recruitment.

Authors:  Francesco P Marchese; Anna Aubareda; Corina Tudor; Jeremy Saklatvala; Andrew R Clark; Jonathan L E Dean
Journal:  J Biol Chem       Date:  2010-07-01       Impact factor: 5.157

6.  Human Pat1b connects deadenylation with mRNA decapping and controls the assembly of processing bodies.

Authors:  Sevim Ozgur; Marina Chekulaeva; Georg Stoecklin
Journal:  Mol Cell Biol       Date:  2010-06-28       Impact factor: 4.272

7.  Cell cycle progression in G1 and S phases is CCR4 dependent following ionizing radiation or replication stress in Saccharomyces cerevisiae.

Authors:  Tammy J Westmoreland; Jeffrey R Marks; John A Olson; Eric M Thompson; Michael A Resnick; Craig B Bennett
Journal:  Eukaryot Cell       Date:  2004-04

8.  Small regulatory RNAs inhibit RNA polymerase II during the elongation phase of transcription.

Authors:  Shouhong Guang; Aaron F Bochner; Kirk B Burkhart; Nick Burton; Derek M Pavelec; Scott Kennedy
Journal:  Nature       Date:  2010-06-13       Impact factor: 49.962

9.  Cytoplasmic polyadenylation element (CPE)- and CPE-binding protein (CPEB)-independent mechanisms regulate early class maternal mRNA translational activation in Xenopus oocytes.

Authors:  Amanda Charlesworth; Linda L Cox; Angus M MacNicol
Journal:  J Biol Chem       Date:  2004-01-29       Impact factor: 5.157

10.  A neuronal isoform of CPEB regulates local protein synthesis and stabilizes synapse-specific long-term facilitation in aplysia.

Authors:  Kausik Si; Maurizio Giustetto; Amit Etkin; Ruby Hsu; Agnieszka M Janisiewicz; Maria Conchetta Miniaci; Joung-Hun Kim; Huixiang Zhu; Eric R Kandel
Journal:  Cell       Date:  2003-12-26       Impact factor: 41.582

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  40 in total

Review 1.  Translational control by changes in poly(A) tail length: recycling mRNAs.

Authors:  Laure Weill; Eulàlia Belloc; Felice-Alessio Bava; Raúl Méndez
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

2.  Fine gene expression regulation by minor sequence variations downstream of the polyadenylation signal.

Authors:  Lidiya V Boldyreva; Lyubov A Yarinich; Elena N Kozhevnikova; Anton V Ivankin; Mikhail O Lebedev; Alexey V Pindyurin
Journal:  Mol Biol Rep       Date:  2021-01-31       Impact factor: 2.316

3.  The ticking tail: daily oscillations in mRNA poly(A) tail length drive circadian cycles in protein synthesis.

Authors:  Ivana Gotic; Ueli Schibler
Journal:  Genes Dev       Date:  2012-12-15       Impact factor: 11.361

4.  Structural features of a picornavirus polymerase involved in the polyadenylation of viral RNA.

Authors:  Brian J Kempf; Michelle M Kelly; Courtney L Springer; Olve B Peersen; David J Barton
Journal:  J Virol       Date:  2013-03-06       Impact factor: 5.103

5.  Nucleolin phosphorylation regulates PARN deadenylase activity during cellular stress response.

Authors:  Xiaokan Zhang; Shu Xiao; Rachele Dolce Rameau; Emral Devany; Zaineb Nadeem; Elif Caglar; Kenneth Ng; Frida Esther Kleiman; Anjana Saxena
Journal:  RNA Biol       Date:  2017-12-15       Impact factor: 4.652

Review 6.  Mechanisms and consequences of alternative polyadenylation.

Authors:  Dafne Campigli Di Giammartino; Kensei Nishida; James L Manley
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

7.  Construction of a full transcription map of human papillomavirus type 18 during productive viral infection.

Authors:  Xiaohong Wang; Craig Meyers; Hsu-Kun Wang; Louise T Chow; Zhi-Ming Zheng
Journal:  J Virol       Date:  2011-06-15       Impact factor: 5.103

8.  Positive and negative feedback loops in the p53 and mRNA 3' processing pathways.

Authors:  Emral Devany; Xiaokan Zhang; Ji Yeon Park; Bin Tian; Frida Esther Kleiman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-11       Impact factor: 11.205

Review 9.  MicroRNAs in heart failure: Non-coding regulators of metabolic function.

Authors:  Xiaokan Zhang; P Christian Schulze
Journal:  Biochim Biophys Acta       Date:  2016-08-18

Review 10.  Determinants and implications of mRNA poly(A) tail size--does this protein make my tail look big?

Authors:  Aimee L Jalkanen; Stephen J Coleman; Jeffrey Wilusz
Journal:  Semin Cell Dev Biol       Date:  2014-06-05       Impact factor: 7.727

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