Literature DB >> 20368444

Addition of poly(A) and poly(A)-rich tails during RNA degradation in the cytoplasm of human cells.

Shimyn Slomovic1, Ella Fremder, Raymond H G Staals, Ger J M Pruijn, Gadi Schuster.   

Abstract

Polyadenylation of RNA is a posttranscriptional modification that can play two somewhat opposite roles: stable polyadenylation of RNA encoded in the nuclear genomes of eukaryote cells contributes to nuclear export, translation initiation, and possibly transcript longevity as well. Conversely, transient polyadenylation targets RNA molecules to rapid exonucleolytic degradation. The latter role has been shown to take place in prokaryotes and organelles, as well as the nucleus of eukaryotic cells. Here we present evidence of hetero- and homopolymeric adenylation of truncated RNA molecules within the cytoplasm of human cells. RNAi-mediated silencing of the major RNA decay machinery of the cell resulted in the accumulation of these polyadenylated RNA fragments, indicating that they are degradation intermediates. Together, these results suggest that a mechanism of RNA decay, involving transient polyadenylation, is present in the cytoplasm of human cells.

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Year:  2010        PMID: 20368444      PMCID: PMC2867691          DOI: 10.1073/pnas.0910621107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance.

Authors:  Marilyne Thiebaut; Elena Kisseleva-Romanova; Mathieu Rougemaille; Jocelyne Boulay; Domenico Libri
Journal:  Mol Cell       Date:  2006-09-15       Impact factor: 17.970

2.  A single subunit, Dis3, is essentially responsible for yeast exosome core activity.

Authors:  Andrzej Dziembowski; Esben Lorentzen; Elena Conti; Bertrand Séraphin
Journal:  Nat Struct Mol Biol       Date:  2006-12-17       Impact factor: 15.369

Review 3.  The highways and byways of mRNA decay.

Authors:  Nicole L Garneau; Jeffrey Wilusz; Carol J Wilusz
Journal:  Nat Rev Mol Cell Biol       Date:  2007-02       Impact factor: 94.444

4.  CUT it out: silencing of noise in the transcriptome.

Authors:  Søren Lykke-Andersen; Torben Heick Jensen
Journal:  Nat Struct Mol Biol       Date:  2006-10       Impact factor: 15.369

5.  Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae.

Authors:  Debrah M Thompson; Roy Parker
Journal:  Mol Cell Biol       Date:  2006-10-30       Impact factor: 4.272

Review 6.  RNA-specific ribonucleotidyl transferases.

Authors:  Georges Martin; Walter Keller
Journal:  RNA       Date:  2007-09-13       Impact factor: 4.942

Review 7.  The exosome and RNA quality control in the nucleus.

Authors:  Stepanka Vanacova; Richard Stefl
Journal:  EMBO Rep       Date:  2007-07       Impact factor: 8.807

8.  TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation.

Authors:  Inha Heo; Chirlmin Joo; Young-Kook Kim; Minju Ha; Mi-Jeong Yoon; Jun Cho; Kyu-Hyeon Yeom; Jinju Han; V Narry Kim
Journal:  Cell       Date:  2009-08-21       Impact factor: 41.582

9.  A poxvirus host range protein, CP77, binds to a cellular protein, HMG20A, and regulates its dissociation from the vaccinia virus genome in CHO-K1 cells.

Authors:  Jye-Chian Hsiao; Chien-Chiang Chao; Ming-Jer Young; Yu-Tai Chang; Er-Chieh Cho; Wen Chang
Journal:  J Virol       Date:  2006-08       Impact factor: 5.103

10.  Human cell growth requires a functional cytoplasmic exosome, which is involved in various mRNA decay pathways.

Authors:  Erwin L van Dijk; Geurt Schilders; Ger J M Pruijn
Journal:  RNA       Date:  2007-06-01       Impact factor: 4.942

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  30 in total

1.  The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L.

Authors:  Rafal Tomecki; Maiken S Kristiansen; Søren Lykke-Andersen; Aleksander Chlebowski; Katja M Larsen; Roman J Szczesny; Karolina Drazkowska; Agnieszka Pastula; Jens S Andersen; Piotr P Stepien; Andrzej Dziembowski; Torben Heick Jensen
Journal:  EMBO J       Date:  2010-06-08       Impact factor: 11.598

2.  Dis3-like 1: a novel exoribonuclease associated with the human exosome.

Authors:  Raymond H J Staals; Alfred W Bronkhorst; Geurt Schilders; Shimyn Slomovic; Gadi Schuster; Albert J R Heck; Reinout Raijmakers; Ger J M Pruijn
Journal:  EMBO J       Date:  2010-06-08       Impact factor: 11.598

Review 3.  The exozyme model: a continuum of functionally distinct complexes.

Authors:  Daniel L Kiss; Erik D Andrulis
Journal:  RNA       Date:  2010-11-10       Impact factor: 4.942

Review 4.  Ending the message: poly(A) signals then and now.

Authors:  Nick J Proudfoot
Journal:  Genes Dev       Date:  2011-09-01       Impact factor: 11.361

5.  Crystal structures of CRISPR-associated Csx3 reveal a manganese-dependent deadenylation exoribonuclease.

Authors:  Xinfu Yan; Wei Guo; Y Adam Yuan
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

6.  Landscape of RNA polyadenylation in E. coli.

Authors:  Alexandre Maes; Céline Gracia; Nicolas Innocenti; Kaiyang Zhang; Erik Aurell; Eliane Hajnsdorf
Journal:  Nucleic Acids Res       Date:  2017-03-17       Impact factor: 16.971

Review 7.  A tale of non-canonical tails: gene regulation by post-transcriptional RNA tailing.

Authors:  Sha Yu; V Narry Kim
Journal:  Nat Rev Mol Cell Biol       Date:  2020-06-01       Impact factor: 94.444

Review 8.  So close, no matter how far: multiple paths connecting transcription to mRNA translation in eukaryotes.

Authors:  Boris Slobodin; Rivka Dikstein
Journal:  EMBO Rep       Date:  2020-08-16       Impact factor: 8.807

9.  Exploration of CCA-added RNAs revealed the expression of mitochondrial non-coding RNAs regulated by CCA-adding enzyme.

Authors:  Kamlesh Pawar; Megumi Shigematsu; Phillipe Loher; Shozo Honda; Isidore Rigoutsos; Yohei Kirino
Journal:  RNA Biol       Date:  2019-09-12       Impact factor: 4.652

10.  Rapid cytoplasmic turnover of yeast ribosomes in response to rapamycin inhibition of TOR.

Authors:  Dimitri G Pestov; Natalia Shcherbik
Journal:  Mol Cell Biol       Date:  2012-03-26       Impact factor: 4.272

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