Literature DB >> 17872511

RNA-specific ribonucleotidyl transferases.

Georges Martin1, Walter Keller.   

Abstract

RNA-specific nucleotidyl transferases (rNTrs) are a diverse family of template-independent polymerases that add ribonucleotides to the 3'-ends of RNA molecules. All rNTrs share a related active-site architecture first described for DNA polymerase beta and a catalytic mechanism conserved among DNA and RNA polymerases. The best known examples are the nuclear poly(A) polymerases involved in the 3'-end processing of eukaryotic messenger RNA precursors and the ubiquitous CCA-adding enzymes that complete the 3'-ends of tRNA molecules. In recent years, a growing number of new enzymes have been added to the list that now includes the "noncanonical" poly(A) polymerases involved in RNA quality control or in the readenylation of dormant messenger RNAs in the cytoplasm. Other members of the group are terminal uridylyl transferases adding single or multiple UMP residues in RNA-editing reactions or upon the maturation of small RNAs and poly(U) polymerases, the substrates of which are still not known. 2'-5'Oligo(A) synthetases differ from the other rNTrs by synthesizing oligonucleotides with 2'-5'-phosphodiester bonds de novo.

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Year:  2007        PMID: 17872511      PMCID: PMC2040100          DOI: 10.1261/rna.652807

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  119 in total

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Authors:  L Aravind; E V Koonin
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3.  Crystal structure of the human CCA-adding enzyme: insights into template-independent polymerization.

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Journal:  J Mol Biol       Date:  2003-05-16       Impact factor: 5.469

4.  Crystal structures of an archaeal class I CCA-adding enzyme and its nucleotide complexes.

Authors:  Yong Xiong; Fang Li; Jimin Wang; Alan M Weiner; Thomas A Steitz
Journal:  Mol Cell       Date:  2003-11       Impact factor: 17.970

5.  Crystal structure of the 2'-specific and double-stranded RNA-activated interferon-induced antiviral protein 2'-5'-oligoadenylate synthetase.

Authors:  Rune Hartmann; Just Justesen; Saumendra N Sarkar; Ganes C Sen; Vivien C Yee
Journal:  Mol Cell       Date:  2003-11       Impact factor: 17.970

Review 6.  Degradation of stable RNA in bacteria.

Authors:  Murray P Deutscher
Journal:  J Biol Chem       Date:  2003-08-26       Impact factor: 5.157

7.  DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily.

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8.  Polyadenylylation destabilizes the rpsO mRNA of Escherichia coli.

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9.  RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli.

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10.  The topoisomerase-related function gene TRF4 affects cellular sensitivity to the antitumor agent camptothecin.

Authors:  C Walowsky; D J Fitzhugh; I B Castaño; J Y Ju; N A Levin; M F Christman
Journal:  J Biol Chem       Date:  1999-03-12       Impact factor: 5.157

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  108 in total

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2.  Addition of poly(A) and poly(A)-rich tails during RNA degradation in the cytoplasm of human cells.

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Review 3.  Determinants of substrate specificity in RNA-dependent nucleotidyl transferases.

Authors:  Georges Martin; Sylvie Doublié; Walter Keller
Journal:  Biochim Biophys Acta       Date:  2007-12-14

4.  Sponge OAS has a distinct genomic structure within the 2-5A synthetase family.

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Journal:  Mol Genet Genomics       Date:  2008-09-17       Impact factor: 3.291

5.  3' adenylation determines mRNA abundance and monitors completion of RNA editing in T. brucei mitochondria.

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Journal:  EMBO J       Date:  2008-05-08       Impact factor: 11.598

6.  Identification of 2'-5'-Oligoadenylate Synthetase-Like Gene in Goose: Gene Structure, Expression Patterns, and Antiviral Activity Against Newcastle Disease Virus.

Authors:  Chao Yang; Fei Liu; Shun Chen; Mingshu Wang; Renyong Jia; Dekang Zhu; Mafeng Liu; Kunfeng Sun; Qiao Yang; Ying Wu; Xiaoyue Chen; Anchun Cheng
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7.  Nontemplate-driven polymers: clues to a minimal form of organization closure at the early stages of living systems.

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8.  Uridylation by TUT4 and TUT7 marks mRNA for degradation.

Authors:  Jaechul Lim; Minju Ha; Hyeshik Chang; S Chul Kwon; Dhirendra K Simanshu; Dinshaw J Patel; V Narry Kim
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Review 9.  RNA processing and its regulation: global insights into biological networks.

Authors:  Donny D Licatalosi; Robert B Darnell
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Review 10.  MicroRNA assassins: factors that regulate the disappearance of miRNAs.

Authors:  Zoya S Kai; Amy E Pasquinelli
Journal:  Nat Struct Mol Biol       Date:  2010-01       Impact factor: 15.369

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