Literature DB >> 17468785

In situ data collection and structure refinement from microcapillary protein crystallization.

Maneesh K Yadav1, Cory J Gerdts, Ruslan Sanishvili, Ward W Smith, L Spencer Roach, Rustem F Ismagilov, Peter Kuhn, Raymond C Stevens.   

Abstract

In situ X-ray data collection has the potential to eliminate the challenging task of mounting and cryocooling often fragile protein crystals, reducing a major bottleneck in the structure determination process. An apparatus used to grow protein crystals in capillaries and to compare the background X-ray scattering of the components, including thin-walled glass capillaries against Teflon, and various fluorocarbon oils against each other, is described. Using thaumatin as a test case at 1.8 Å resolution, this study demonstrates that high-resolution electron density maps and refined models can be obtained from in situ diffraction of crystals grown in microcapillaries.

Entities:  

Year:  2005        PMID: 17468785      PMCID: PMC1858637          DOI: 10.1107/S002188980502649X

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   3.304


  20 in total

Review 1.  Protein crystallization by capillary counterdiffusion for applied crystallographic structure determination.

Authors:  Joseph D Ng; José A Gavira; Juan M García-Ruíz
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

2.  A microfluidic system for controlling reaction networks in time.

Authors:  Helen Song; Joshua D Tice; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2003-02-17       Impact factor: 15.336

3.  A droplet-based, composite PDMS/glass capillary microfluidic system for evaluating protein crystallization conditions by microbatch and vapor-diffusion methods with on-chip X-ray diffraction.

Authors:  Bo Zheng; Joshua D Tice; L Spencer Roach; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2004-05-03       Impact factor: 15.336

4.  wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models.

Authors:  A Perrakis; T K Sixma; K S Wilson; V S Lamzin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-07-01

Review 5.  Life in the fast lane for protein crystallization and X-ray crystallography.

Authors:  Marc L Pusey; Zhi-Jie Liu; Wolfram Tempel; Jeremy Praissman; Dawei Lin; Bi-Cheng Wang; José A Gavira; Joseph D Ng
Journal:  Prog Biophys Mol Biol       Date:  2005-07       Impact factor: 3.667

6.  Screening of protein crystallization conditions on a microfluidic chip using nanoliter-size droplets.

Authors:  Bo Zheng; L Spencer Roach; Rustem F Ismagilov
Journal:  J Am Chem Soc       Date:  2003-09-17       Impact factor: 15.419

7.  Crystal structure of botulinum neurotoxin type A and implications for toxicity.

Authors:  D B Lacy; W Tepp; A C Cohen; B R DasGupta; R C Stevens
Journal:  Nat Struct Biol       Date:  1998-10

8.  The atomic structure of the bluetongue virus core.

Authors:  J M Grimes; J N Burroughs; P Gouet; J M Diprose; R Malby; S Ziéntara; P P Mertens; D I Stuart
Journal:  Nature       Date:  1998-10-01       Impact factor: 49.962

9.  Primary radiation damage of protein crystals by an intense synchrotron X-ray beam.

Authors:  T Y Teng; K Moffat
Journal:  J Synchrotron Radiat       Date:  2000-09-01       Impact factor: 2.616

10.  Structural basis of severe acute respiratory syndrome coronavirus ADP-ribose-1''-phosphate dephosphorylation by a conserved domain of nsP3.

Authors:  Kumar Singh Saikatendu; Jeremiah S Joseph; Vanitha Subramanian; Tom Clayton; Mark Griffith; Kin Moy; Jeffrey Velasquez; Benjamin W Neuman; Michael J Buchmeier; Raymond C Stevens; Peter Kuhn
Journal:  Structure       Date:  2005-11       Impact factor: 5.006

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  23 in total

1.  Diffraction study of protein crystals grown in cryoloops and micromounts.

Authors:  Michael A Berger; Johannes H Decker; Irimpan I Mathews
Journal:  J Appl Crystallogr       Date:  2010-10-20       Impact factor: 3.304

2.  Lessons from high-throughput protein crystallization screening: 10 years of practical experience.

Authors:  Joseph R Luft; Edward H Snell; George T Detitta
Journal:  Expert Opin Drug Discov       Date:  2011-03-22       Impact factor: 6.098

3.  In situ X-ray data collection and structure phasing of protein crystals at Structural Biology Center 19-ID.

Authors:  Karolina Michalska; Kemin Tan; Changsoo Chang; Hui Li; Catherine Hatzos-Skintges; Michael Molitsky; Randy Alkire; Andrzej Joachimiak
Journal:  J Synchrotron Radiat       Date:  2015-10-15       Impact factor: 2.616

Review 4.  Microfluidic cartridges preloaded with nanoliter plugs of reagents: an alternative to 96-well plates for screening.

Authors:  Delai L Chen; Rustem F Ismagilov
Journal:  Curr Opin Chem Biol       Date:  2006-05-03       Impact factor: 8.822

5.  Nanoliter microfluidic hybrid method for simultaneous screening and optimization validated with crystallization of membrane proteins.

Authors:  Liang Li; Debarshi Mustafi; Qiang Fu; Valentina Tereshko; Delai L Chen; Joshua D Tice; Rustem F Ismagilov
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-11       Impact factor: 11.205

Review 6.  Reactions in droplets in microfluidic channels.

Authors:  Helen Song; Delai L Chen; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2006-11-13       Impact factor: 15.336

7.  Time-controlled microfluidic seeding in nL-volume droplets to separate nucleation and growth stages of protein crystallization.

Authors:  Cory J Gerdts; Valentina Tereshko; Maneesh K Yadav; Irina Dementieva; Frank Collart; Andrzej Joachimiak; Raymond C Stevens; Peter Kuhn; Anthony Kossiakoff; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2006-12-11       Impact factor: 15.336

8.  Acoustic methods for high-throughput protein crystal mounting at next-generation macromolecular crystallographic beamlines.

Authors:  Christian G Roessler; Anthony Kuczewski; Richard Stearns; Richard Ellson; Joseph Olechno; Allen M Orville; Marc Allaire; Alexei S Soares; Annie Héroux
Journal:  J Synchrotron Radiat       Date:  2013-08-08       Impact factor: 2.616

9.  Facilitating protein crystal cryoprotection in thick-walled plastic capillaries by high-pressure cryocooling.

Authors:  Yi-Fan Chen; Mark W Tate; Sol M Gruner
Journal:  J Appl Crystallogr       Date:  2009-04-28       Impact factor: 3.304

10.  A preliminary neutron crystallographic study of thaumatin.

Authors:  Susana C M Teixeira; Matthew P Blakeley; Ricardo M F Leal; Edward P Mitchell; V Trevor Forsyth
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-04-05
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