Literature DB >> 22646073

Lessons from high-throughput protein crystallization screening: 10 years of practical experience.

Joseph R Luft1, Edward H Snell, George T Detitta.   

Abstract

INTRODUCTION: X-ray crystallography provides the majority of our structural biological knowledge at a molecular level and, in terms of pharmaceutical design, is a valuable tool to accelerate discovery. It is the premier technique in the field, but its usefulness is significantly limited by the need to grow well-diffracting crystals. It is for this reason that high-throughput crystallization has become a key technology that has matured over the past 10 years through the field of structural genomics. Areas covered : The authors describe their experiences in high-throughput crystallization screening in the context of structural genomics and the general biomedical community. They focus on the lessons learnt from the operation of a high-throughput crystallization-screening laboratory, which to date has screened over 12,500 biological macromolecules. They also describe the approaches taken to maximize the success while minimizing the effort. Through this, the authors hope that the reader will gain an insight into the efficient design of a laboratory and protocols to accomplish high-throughput crystallization on a single-, multiuser laboratory or industrial scale. Expert opinion : High-throughput crystallization screening is readily available but, despite the power of the crystallographic technique, getting crystals is still not a solved problem. High-throughput approaches can help when used skillfully; however, they still require human input in the detailed analysis and interpretation of results to be more successful.

Entities:  

Year:  2011        PMID: 22646073      PMCID: PMC3637395          DOI: 10.1517/17460441.2011.566857

Source DB:  PubMed          Journal:  Expert Opin Drug Discov        ISSN: 1746-0441            Impact factor:   6.098


  77 in total

1.  Automated analysis of vapor diffusion crystallization drops with an X-ray beam.

Authors:  Lilian Jacquamet; Jeremy Ohana; Jacques Joly; Franck Borel; Michel Pirocchi; Philippe Charrault; Alain Bertoni; Pascale Israel-Gouy; Philippe Carpentier; Frank Kozielski; Delphine Blot; Jean-Luc Ferrer
Journal:  Structure       Date:  2004-07       Impact factor: 5.006

2.  Macromolecular crystallization with microfluidic free-interface diffusion.

Authors:  Brent Segelke
Journal:  Expert Rev Proteomics       Date:  2005-04       Impact factor: 3.940

3.  Dimeric quaternary structure of the prototypical dual specificity phosphatase VH1.

Authors:  Adem C Koksal; Jonathan D Nardozzi; Gino Cingolani
Journal:  J Biol Chem       Date:  2009-02-10       Impact factor: 5.157

Review 4.  Three-dimensional pharmacophore methods in drug discovery.

Authors:  Andrew R Leach; Valerie J Gillet; Richard A Lewis; Robin Taylor
Journal:  J Med Chem       Date:  2010-01-28       Impact factor: 7.446

5.  Protein crystallization analysis on the World Community Grid.

Authors:  Christian A Cumbaa; Igor Jurisica
Journal:  J Struct Funct Genomics       Date:  2010-01-14

6.  Structural characterization of a 140 degrees domain movement in the two-step reaction catalyzed by 4-chlorobenzoate:CoA ligase.

Authors:  Albert S Reger; Rui Wu; Debra Dunaway-Mariano; Andrew M Gulick
Journal:  Biochemistry       Date:  2008-07-12       Impact factor: 3.162

7.  Crystal structure of the pyocyanin biosynthetic protein PhzS.

Authors:  Bryan T Greenhagen; Katherine Shi; Howard Robinson; Swarna Gamage; Asim K Bera; Jane E Ladner; James F Parsons
Journal:  Biochemistry       Date:  2008-04-17       Impact factor: 3.162

8.  Structures of rat cytosolic PEPCK: insight into the mechanism of phosphorylation and decarboxylation of oxaloacetic acid.

Authors:  Sarah M Sullivan; Todd Holyoak
Journal:  Biochemistry       Date:  2007-08-09       Impact factor: 3.162

9.  Structure of NS1A effector domain from the influenza A/Udorn/72 virus.

Authors:  Shuangluo Xia; Arthur F Monzingo; Jon D Robertus
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-12-18

10.  The application and use of chemical space mapping to interpret crystallization screening results.

Authors:  Edward H Snell; Ray M Nagel; Ann Wojtaszcyk; Hugh O'Neill; Jennifer L Wolfley; Joseph R Luft
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-11-18
View more
  23 in total

1.  The use of haptic interfaces and web services in crystallography: an application for a 'screen to beam' interface.

Authors:  Andrew E Bruno; Alexei S Soares; Robin L Owen; Edward H Snell
Journal:  J Appl Crystallogr       Date:  2016-11-11       Impact factor: 3.304

2.  The Crystal Structure of an Integral Membrane Fatty Acid α-Hydroxylase.

Authors:  Guangyu Zhu; Mary Koszelak-Rosenblum; Sara M Connelly; Mark E Dumont; Michael G Malkowski
Journal:  J Biol Chem       Date:  2015-10-28       Impact factor: 5.157

3.  A new view on crystal harvesting.

Authors:  Joseph R Luft; Thomas D Grant; Jennifer R Wolfley; Edward H Snell
Journal:  J Appl Crystallogr       Date:  2014-05-29       Impact factor: 3.304

4.  Minimal physical requirements for crystal growth self-poisoning.

Authors:  Stephen Whitelam; Yuba Raj Dahal; Jeremy D Schmit
Journal:  J Chem Phys       Date:  2016-02-14       Impact factor: 3.488

5.  Crystal structure of rofecoxib bound to human cyclooxygenase-2.

Authors:  Benjamin J Orlando; Michael G Malkowski
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-09-22       Impact factor: 1.056

Review 6.  Structural biology of TRP channels.

Authors:  Ute A Hellmich; Rachelle Gaudet
Journal:  Handb Exp Pharmacol       Date:  2014

7.  Structural characterization and modeling of the Borrelia burgdorferi hybrid histidine kinase Hk1 periplasmic sensor: A system for sensing small molecules associated with tick feeding.

Authors:  William J Bauer; Amit Luthra; Guangyu Zhu; Justin D Radolf; Michael G Malkowski; Melissa J Caimano
Journal:  J Struct Biol       Date:  2015-08-28       Impact factor: 2.867

8.  The crystal structure of α-Dioxygenase provides insight into diversity in the cyclooxygenase-peroxidase superfamily.

Authors:  Christopher C Goulah; Guangyu Zhu; Mary Koszelak-Rosenblum; Michael G Malkowski
Journal:  Biochemistry       Date:  2013-02-14       Impact factor: 3.162

9.  Crystal structures of α-dioxygenase from Oryza sativa: insights into substrate binding and activation by hydrogen peroxide.

Authors:  Guangyu Zhu; Mary Koszelak-Rosenblum; Michael G Malkowski
Journal:  Protein Sci       Date:  2013-09-04       Impact factor: 6.725

10.  Substrate-selective Inhibition of Cyclooxygeanse-2 by Fenamic Acid Derivatives Is Dependent on Peroxide Tone.

Authors:  Benjamin J Orlando; Michael G Malkowski
Journal:  J Biol Chem       Date:  2016-05-20       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.