Literature DB >> 17243815

High-resolution 2D NMR spectroscopy of bicelles to measure the membrane interaction of ligands.

Sergey V Dvinskikh1, Ulrich H N Dürr, Kazutoshi Yamamoto, Ayyalusamy Ramamoorthy.   

Abstract

Magnetically aligned bicelles are increasingly being used as model membranes in solution- and solid-state NMR studies of the structure, dynamics, topology, and interaction of membrane-associated peptides and proteins. These studies commonly utilize the PISEMA pulse sequence to measure dipolar coupling and chemical shift, the two key parameters used in subsequent structural analysis. In the present study, we demonstrate that the PISEMA and other rotating-frame pulse sequences are not suitable for the measurement of long-range heteronuclear dipolar couplings, and that they provide inaccurate values when multiple protons are coupled to a 13C nucleus. Furthermore, we demonstrate that a laboratory-frame separated-local-field experiment is capable of overcoming these difficulties in magnetically aligned bicelles. An extension of this approach to accurately measure 13C-31P and 1H-31P couplings from phospholipids, which are useful to understand the interaction of molecules with the membrane, is also described. In these 2D experiments, natural abundance 13C was observed from bicelles containing DMPC and DHPC lipid molecules. As a first application, these solid-state NMR approaches were utilized to probe the membrane interaction of an antidepressant molecule, desipramine, and its location in the membrane.

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Year:  2007        PMID: 17243815      PMCID: PMC2527737          DOI: 10.1021/ja065536k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  50 in total

1.  Imaging membrane protein helical wheels.

Authors:  J Wang; J Denny; C Tian; S Kim; Y Mo; F Kovacs; Z Song; K Nishimura; Z Gan; R Fu; J R Quine; T A Cross
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

2.  Effects of anionic lipid and ion concentrations on the topology and segmental mobility of colicin Ia channel domain from solid-state NMR.

Authors:  X L Yao; M Hong
Journal:  Biochemistry       Date:  2006-01-10       Impact factor: 3.162

3.  PITANSEMA-MAS, a solid-state NMR method to measure heteronuclear dipolar couplings under MAS.

Authors:  K Yamamoto; V L Ermakov; D K Lee; A Ramamoorthy
Journal:  Chem Phys Lett       Date:  2005-06-07       Impact factor: 2.328

4.  Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR.

Authors:  Adam Lange; Karin Giller; Sönke Hornig; Marie-France Martin-Eauclaire; Olaf Pongs; Stefan Becker; Marc Baldus
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

5.  Morphology of three lyotropic liquid crystalline biological NMR media studied by translational diffusion anisotropy.

Authors:  S Gaemers; A Bax
Journal:  J Am Chem Soc       Date:  2001-12-12       Impact factor: 15.419

6.  Structure of tightly membrane-bound mastoparan-X, a G-protein-activating peptide, determined by solid-state NMR.

Authors:  Yasuto Todokoro; Ikuko Yumen; Kei Fukushima; Shin-Won Kang; Jang-Su Park; Toshiyuki Kohno; Kaori Wakamatsu; Hideo Akutsu; Toshimichi Fujiwara
Journal:  Biophys J       Date:  2006-05-19       Impact factor: 4.033

7.  MSI-78, an analogue of the magainin antimicrobial peptides, disrupts lipid bilayer structure via positive curvature strain.

Authors:  Kevin J Hallock; Dong-Kuk Lee; A Ramamoorthy
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

8.  Structural and orientational constraints of bacteriorhodopsin in purple membranes determined by oriented-sample solid-state NMR spectroscopy.

Authors:  Miya Kamihira; Thomas Vosegaard; A James Mason; Suzana K Straus; Niels Chr Nielsen; Anthony Watts
Journal:  J Struct Biol       Date:  2005-01       Impact factor: 2.867

9.  Magnetically aligned phospholipid bilayers with large q ratios stabilize magnetic alignment with high order in the gel and L(alpha) phases.

Authors:  Thomas B Cardon; Paresh C Dave; Gary A Lorigan
Journal:  Langmuir       Date:  2005-05-10       Impact factor: 3.882

10.  Characterization of magnetically orientable bilayers in mixtures of dihexanoylphosphatidylcholine and dimyristoylphosphatidylcholine by solid-state NMR.

Authors:  C R Sanders; J P Schwonek
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

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  19 in total

1.  Fast NMR data acquisition from bicelles containing a membrane-associated peptide at natural-abundance.

Authors:  Kazutoshi Yamamoto; Subramanian Vivekanandan; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2011-10-11       Impact factor: 2.991

2.  Orientation determination of interfacial beta-sheet structures in situ.

Authors:  Khoi Tan Nguyen; John Thomas King; Zhan Chen
Journal:  J Phys Chem B       Date:  2010-07-01       Impact factor: 2.991

3.  Proton-evolved local-field solid-state NMR studies of cytochrome b5 embedded in bicelles, revealing both structural and dynamical information.

Authors:  Ronald Soong; Pieter E S Smith; Jiadi Xu; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

4.  Proton evolved local field solid-state nuclear magnetic resonance using Hadamard encoding: theory and application to membrane proteins.

Authors:  T Gopinath; Kaustubh R Mote; Gianluigi Veglia
Journal:  J Chem Phys       Date:  2011-08-21       Impact factor: 3.488

5.  Oriented samples: a tool for determining the membrane topology and the mechanism of action of cationic antimicrobial peptides by solid-state NMR.

Authors:  Matthieu Fillion; Michèle Auger
Journal:  Biophys Rev       Date:  2015-02-24

6.  Membrane disordering is not sufficient for membrane permeabilization by islet amyloid polypeptide: studies of IAPP(20-29) fragments.

Authors:  Jeffrey R Brender; Deborah L Heyl; Shyamprasad Samisetti; Samuel A Kotler; Joshua M Osborne; Ranadheer R Pesaru; Ayyalusamy Ramamoorthy
Journal:  Phys Chem Chem Phys       Date:  2013-03-15       Impact factor: 3.676

7.  Solid-state ¹³C NMR reveals annealing of raft-like membranes containing cholesterol by the intrinsically disordered protein α-Synuclein.

Authors:  Avigdor Leftin; Constantin Job; Klaus Beyer; Michael F Brown
Journal:  J Mol Biol       Date:  2013-04-11       Impact factor: 5.469

8.  Sensitivity enhancement in static solid-state NMR experiments via single- and multiple-quantum dipolar coherences.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

9.  Induction of negative curvature as a mechanism of cell toxicity by amyloidogenic peptides: the case of islet amyloid polypeptide.

Authors:  Pieter E S Smith; Jeffrey R Brender; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2009-04-01       Impact factor: 15.419

Review 10.  Beyond NMR spectra of antimicrobial peptides: dynamical images at atomic resolution and functional insights.

Authors:  Ayyalusamy Ramamoorthy
Journal:  Solid State Nucl Magn Reson       Date:  2009-03-31       Impact factor: 2.293

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