Literature DB >> 17211067

Dose dependence of radiation damage for protein crystals studied at various X-ray energies.

Nobutaka Shimizu1, Kunio Hirata, Kazuya Hasegawa, Go Ueno, Masaki Yamamoto.   

Abstract

Radiation damage to protein crystals is the most serious problem in obtaining accurate structures from protein crystallography. In order to examine the photon energy dependence of radiation damage, 12 to 15 data sets from each of nine tetragonal lysozyme crystals were collected at nine different X-ray energies (6.5, 7.1, 8.3, 9.9, 12.4, 16.5, 20.0, 24.8 and 33.0 keV) using beamline BL41XU at SPring-8. All results were compared on the basis of absorbed dose, expressed in Gray (Gy). Crystallographic statistics, such as the values of lattice constants, R(merge) and I/sigma(I), for each data set degraded at all nine energies as the exposure time for each crystal increased. In all data sets, radiation damage was observed after the absorbed dose exceeded 10(6) Gy. However, from the point of view of crystallographic statistics normalized to the absorbed dose, no clear dependence on photon energy was observed in these results. Structural refinement showed that the average B-factor for the last data set was larger than that for the first data set at all energies tested. However, no energy dependence of radiation damage on B-factor was found. Furthermore, disruption of disulfide bonds due to radiation damage was observed in electron density maps even at the highest photon energy (33 keV) used in this study. Therefore, these results suggest that radiation damage in the energy range investigated could be evaluated based on absorbed dose without energy dependence, and that it is important to minimize the absorbed dose in a crystal sample for obtaining an accurate protein structure.

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Year:  2006        PMID: 17211067     DOI: 10.1107/S0909049506049296

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  28 in total

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5.  Energy dependence of site-specific radiation damage in protein crystals.

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6.  Dark progression reveals slow timescales for radiation damage between T = 180 and 240 K.

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7.  Radiation decay of thaumatin crystals at three X-ray energies.

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8.  On the variability of experimental data in macromolecular crystallography.

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9.  Know your dose: RADDOSE.

Authors:  Karthik S Paithankar; Elspeth F Garman
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10.  Radiation damage in macromolecular crystallography: what is it and why should we care?

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