Literature DB >> 27046341

Current advances in synchrotron radiation instrumentation for MX experiments.

Robin L Owen1, Jordi Juanhuix2, Martin Fuchs3.   

Abstract

Following pioneering work 40 years ago, synchrotron beamlines dedicated to macromolecular crystallography (MX) have improved in almost every aspect as instrumentation has evolved. Beam sizes and crystal dimensions are now on the single micron scale while data can be collected from proteins with molecular weights over 10 MDa and from crystals with unit cell dimensions over 1000 Å. Furthermore it is possible to collect a complete data set in seconds, and obtain the resulting structure in minutes. The impact of MX synchrotron beamlines and their evolution is reflected in their scientific output, and MX is now the method of choice for a variety of aims from ligand binding to structure determination of membrane proteins, viruses and ribosomes, resulting in a much deeper understanding of the machinery of life. A main driving force of beamline evolution have been advances in almost every aspect of the instrumentation comprising a synchrotron beamline. In this review we aim to provide an overview of the current status of instrumentation at modern MX experiments. The most critical optical components are discussed, as are aspects of endstation design, sample delivery, visualisation and positioning, the sample environment, beam shaping, detectors and data acquisition and processing.
Copyright © 2016. Published by Elsevier Inc.

Entities:  

Keywords:  Beamline instrumentation; Experimental methods; Macromolecular crystallography; Review; Synchrotron radiation; X-ray diffraction

Mesh:

Substances:

Year:  2016        PMID: 27046341      PMCID: PMC5505570          DOI: 10.1016/j.abb.2016.03.021

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  102 in total

1.  Automated analysis of vapor diffusion crystallization drops with an X-ray beam.

Authors:  Lilian Jacquamet; Jeremy Ohana; Jacques Joly; Franck Borel; Michel Pirocchi; Philippe Charrault; Alain Bertoni; Pascale Israel-Gouy; Philippe Carpentier; Frank Kozielski; Delphine Blot; Jean-Luc Ferrer
Journal:  Structure       Date:  2004-07       Impact factor: 5.006

2.  Ultra-thin optical grade scCVD diamond as X-ray beam position monitor.

Authors:  Kewin Desjardins; Michal Pomorski; John Morse
Journal:  J Synchrotron Radiat       Date:  2014-10-04       Impact factor: 2.616

3.  Modular high frame rate detector for synchrotron applications.

Authors:  Bipin Singh; Samta Thacker; Valeriy Gaysinskiy; Lin Yang; Liang Guo; Thomas Irving; Vivek Nagarkar
Journal:  Nucl Instrum Methods Phys Res A       Date:  2011-09-01       Impact factor: 1.455

4.  X-ray induced reduction of the crystal of high-molecular-weight cytochrome c revealed by microspectrophotometry.

Authors:  Midori Sato; Naoki Shibata; Yukio Morimoto; Yuki Takayama; Kiyoshi Ozawa; Hideo Akutsu; Yoshiki Higuchi; Noritake Yasuoka
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

5.  Automatic processing of macromolecular crystallography X-ray diffraction data at the ESRF.

Authors:  Stéphanie Monaco; Elspeth Gordon; Matthew W Bowler; Solange Delagenière; Matias Guijarro; Darren Spruce; Olof Svensson; Sean M McSweeney; Andrew A McCarthy; Gordon Leonard; Max H Nanao
Journal:  J Appl Crystallogr       Date:  2013-05-15       Impact factor: 3.304

6.  PRIGo: a new multi-axis goniometer for macromolecular crystallography.

Authors:  Sandro Waltersperger; Vincent Olieric; Claude Pradervand; Wayne Glettig; Marco Salathe; Martin R Fuchs; Adrian Curtin; Xiaoqiang Wang; Simon Ebner; Ezequiel Panepucci; Tobias Weinert; Clemens Schulze-Briese; Meitian Wang
Journal:  J Synchrotron Radiat       Date:  2015-05-09       Impact factor: 2.616

Review 7.  The potential of future light sources to explore the structure and function of matter.

Authors:  Edgar Weckert
Journal:  IUCrJ       Date:  2015-02-03       Impact factor: 4.769

8.  High-density grids for efficient data collection from multiple crystals.

Authors:  Elizabeth L Baxter; Laura Aguila; Roberto Alonso-Mori; Christopher O Barnes; Christopher A Bonagura; Winnie Brehmer; Axel T Brunger; Guillermo Calero; Tom T Caradoc-Davies; Ruchira Chatterjee; William F Degrado; James S Fraser; Mohamed Ibrahim; Jan Kern; Brian K Kobilka; Andrew C Kruse; Karl M Larsson; Heinrik T Lemke; Artem Y Lyubimov; Aashish Manglik; Scott E McPhillips; Erik Norgren; Siew S Pang; S M Soltis; Jinhu Song; Jessica Thomaston; Yingssu Tsai; William I Weis; Rahel A Woldeyes; Vittal Yachandra; Junko Yano; Athina Zouni; Aina E Cohen
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-01-01       Impact factor: 7.652

9.  In situ X-ray beam imaging using an off-axis magnifying coded aperture camera system.

Authors:  Anton Kachatkou; Nicholas Kyele; Peter Scott; Roelof van Silfhout
Journal:  J Synchrotron Radiat       Date:  2013-05-18       Impact factor: 2.616

10.  Serial crystallography on in vivo grown microcrystals using synchrotron radiation.

Authors:  Cornelius Gati; Gleb Bourenkov; Marco Klinge; Dirk Rehders; Francesco Stellato; Dominik Oberthür; Oleksandr Yefanov; Benjamin P Sommer; Stefan Mogk; Michael Duszenko; Christian Betzel; Thomas R Schneider; Henry N Chapman; Lars Redecke
Journal:  IUCrJ       Date:  2014-02-10       Impact factor: 4.769

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  11 in total

Review 1.  Structure-guided engineering of TGF-βs for the development of novel inhibitors and probing mechanism.

Authors:  Andrew P Hinck
Journal:  Bioorg Med Chem       Date:  2018-07-07       Impact factor: 3.641

2.  Physical methods for studying flavoprotein photoreceptors.

Authors:  Estella F Yee; Siddarth Chandrasekaran; Changfan Lin; Brian R Crane
Journal:  Methods Enzymol       Date:  2019-04-04       Impact factor: 1.600

3.  FMX - the Frontier Microfocusing Macromolecular Crystallography Beamline at the National Synchrotron Light Source II.

Authors:  Dieter K Schneider; Wuxian Shi; Babak Andi; Jean Jakoncic; Yuan Gao; Dileep K Bhogadi; Stuart F Myers; Bruno Martins; John M Skinner; Jun Aishima; Kun Qian; Herbert J Bernstein; Edwin O Lazo; Thomas Langdon; John Lara; Grace Shea-McCarthy; Mourad Idir; Lei Huang; Oleg Chubar; Robert M Sweet; Lonny E Berman; Sean McSweeney; Martin R Fuchs
Journal:  J Synchrotron Radiat       Date:  2021-02-25       Impact factor: 2.616

4.  Experiences From Developing Software for Large X-Ray Crystallography-Driven Protein-Ligand Studies.

Authors:  Nicholas M Pearce; Rachael Skyner; Tobias Krojer
Journal:  Front Mol Biosci       Date:  2022-04-11

Review 5.  Advanced high resolution three-dimensional imaging to visualize the cerebral neurovascular network in stroke.

Authors:  Chudai Zeng; Zhuohui Chen; Haojun Yang; Yishu Fan; Lujing Fei; Xinghang Chen; Mengqi Zhang
Journal:  Int J Biol Sci       Date:  2022-01-01       Impact factor: 6.580

6.  Fast automated energy changes at synchrotron radiation beamlines equipped with transfocator or focusing mirrors.

Authors:  Sergey Stepanov; David Kissick; Oleg Makarov; Mark Hilgart; Michael Becker; Nagarajan Venugopalan; Shenglan Xu; Janet L Smith; Robert F Fischetti
Journal:  J Synchrotron Radiat       Date:  2022-02-15       Impact factor: 2.616

7.  Towards a compact and precise sample holder for macromolecular crystallography.

Authors:  Gergely Papp; Christopher Rossi; Robert Janocha; Clement Sorez; Marcos Lopez-Marrero; Anthony Astruc; Andrew McCarthy; Hassan Belrhali; Matthew W Bowler; Florent Cipriani
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-09-29       Impact factor: 7.652

Review 8.  Protein microcrystallography using synchrotron radiation.

Authors:  Masaki Yamamoto; Kunio Hirata; Keitaro Yamashita; Kazuya Hasegawa; Go Ueno; Hideo Ago; Takashi Kumasaka
Journal:  IUCrJ       Date:  2017-08-08       Impact factor: 4.769

9.  KAMO: towards automated data processing for microcrystals.

Authors:  Keitaro Yamashita; Kunio Hirata; Masaki Yamamoto
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-04-24       Impact factor: 7.652

10.  Getting the Most Out of Your Crystals: Data Collection at the New High-Flux, Microfocus MX Beamlines at NSLS-II.

Authors:  Michelle S Miller; Sweta Maheshwari; Wuxian Shi; Yuan Gao; Nam Chu; Alexei S Soares; Philip A Cole; L Mario Amzel; Martin R Fuchs; Jean Jakoncic; Sandra B Gabelli
Journal:  Molecules       Date:  2019-01-30       Impact factor: 4.411

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