Literature DB >> 16983079

Epistasis correlates to genomic complexity.

Rafael Sanjuán1, Santiago F Elena.   

Abstract

Whether systematic genetic interactions (epistasis) occur at the genomic scale remains a challenging topic in evolutionary biology. Epistasis should make a significant contribution to variation in complex traits and influence the evolution of genetic systems as sex, diploidy, dominance, or the contamination of genomes with deleterious mutations. We have collected data from widely different organisms and quantified epistasis in a common, per-generation scale. Simpler genomes, such as those of RNA viruses, display antagonistic epistasis (mutations have smaller effects together than expected); bacterial microorganisms do not apparently deviate from independent effects, whereas in multicellular eukaryotes, a transition toward synergistic epistasis occurs (mutations have larger effects together than expected). We propose that antagonistic epistasis might be a property of compact genomes with few nonpleiotropic biological functions, whereas in complex genomes, synergism might emerge from mutational robustness.

Mesh:

Year:  2006        PMID: 16983079      PMCID: PMC1599975          DOI: 10.1073/pnas.0604543103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  Complexity and robustness.

Authors:  J M Carlson; John Doyle
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

2.  Patterns of epistasis in RNA viruses: a review of the evidence from vaccine design.

Authors:  C L Burch; P E Turner; K A Hanley
Journal:  J Evol Biol       Date:  2003-11       Impact factor: 2.411

3.  In silico predicted robustness of viroids RNA secondary structures. I. The effect of single mutations.

Authors:  Rafael Sanjuán; Javier Forment; Santiago F Elena
Journal:  Mol Biol Evol       Date:  2006-05-05       Impact factor: 16.240

Review 4.  Mechanisms of genetic robustness in RNA viruses.

Authors:  Santiago F Elena; Purificación Carrasco; José-Antonio Daròs; Rafael Sanjuán
Journal:  EMBO Rep       Date:  2006-02       Impact factor: 8.807

Review 5.  Genetics and speciation.

Authors:  J A Coyne
Journal:  Nature       Date:  1992-02-06       Impact factor: 49.962

6.  An experimental test for synergistic epistasis and its application in Chlamydomonas.

Authors:  J A de Visser; R F Hoekstra; H van den Ende
Journal:  Genetics       Date:  1997-03       Impact factor: 4.562

7.  Modular epistasis in yeast metabolism.

Authors:  Daniel Segrè; Alexander Deluna; George M Church; Roy Kishony
Journal:  Nat Genet       Date:  2004-12-12       Impact factor: 38.330

8.  Interaction in fitness between lethal genes in heterozygous condition in Drosophila melanogaster.

Authors:  O Kitagawa
Journal:  Genetics       Date:  1967-12       Impact factor: 4.562

9.  Evidence for positive epistasis in HIV-1.

Authors:  Sebastian Bonhoeffer; Colombe Chappey; Neil T Parkin; Jeanette M Whitcomb; Christos J Petropoulos
Journal:  Science       Date:  2004-11-26       Impact factor: 47.728

10.  Dependence of epistasis on environment and mutation severity as revealed by in silico mutagenesis of phage t7.

Authors:  Lingchong You; John Yin
Journal:  Genetics       Date:  2002-04       Impact factor: 4.562

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  67 in total

1.  Stickbreaking: a novel fitness landscape model that harbors epistasis and is consistent with commonly observed patterns of adaptive evolution.

Authors:  Anna C Nagel; Paul Joyce; Holly A Wichman; Craig R Miller
Journal:  Genetics       Date:  2011-11-17       Impact factor: 4.562

2.  Magnitude and sign epistasis among deleterious mutations in a positive-sense plant RNA virus.

Authors:  J Lalić; S F Elena
Journal:  Heredity (Edinb)       Date:  2012-04-11       Impact factor: 3.821

3.  Dynamic epistasis for different alleles of the same gene.

Authors:  Lin Xu; Brandon Barker; Zhenglong Gu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-11       Impact factor: 11.205

Review 4.  Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies.

Authors:  Rafael Sanjuán
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-06-27       Impact factor: 6.237

5.  The population genetics of mutations: good, bad and indifferent.

Authors:  Laurence Loewe; William G Hill
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

6.  Defining genetic interaction.

Authors:  Ramamurthy Mani; Robert P St Onge; John L Hartman; Guri Giaever; Frederick P Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-27       Impact factor: 11.205

7.  Evolution can favor antagonistic epistasis.

Authors:  Michael M Desai; Daniel Weissman; Marcus W Feldman
Journal:  Genetics       Date:  2007-08-24       Impact factor: 4.562

8.  The evolution of epistasis and its links with genetic robustness, complexity and drift in a phenotypic model of adaptation.

Authors:  Pierre-Alexis Gros; Hervé Le Nagard; Olivier Tenaillon
Journal:  Genetics       Date:  2009-03-11       Impact factor: 4.562

9.  Selection for chaperone-like mediated genetic robustness at low mutation rate: impact of drift, epistasis and complexity.

Authors:  Pierre-Alexis Gros; Olivier Tenaillon
Journal:  Genetics       Date:  2009-03-23       Impact factor: 4.562

10.  Overview of QTL detection in plants and tests for synergistic epistatic interactions.

Authors:  Jean-Luc Jannink; Laurence Moreau; Gilles Charmet; Alain Charcosset
Journal:  Genetica       Date:  2008-08-10       Impact factor: 1.082

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