Literature DB >> 19450460

An alpha-helical peptide in AOT micelles prefers to be localized at the water/headgroup interface.

Jianhui Tian, Angel E Garcia.   

Abstract

A model alpha-helical peptide encapsulated in a reverse micelle is used to study the structure and dynamics of proteins under constrained environments that mimic the membrane-water environment in cells. Molecular dynamics simulations of the self assembly of systems composed of a peptide, sodium bis(2-ethylhexyl) sulfosuccinate (AOT), water, and isooctane show that the peptide prefers to be located at the water/AOT headgroups interface. We explore the effect of the AOT headgroup charge and the peptide charge and find that the peptides migrate to the interface in all cases. These results show that the peptides prefer the constrained hydration environment of the AOT headgroups. The driving force for this configuration is the gain in entropy by released water molecules that otherwise would solvate the protein and surfactant headgroups.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19450460      PMCID: PMC2712191          DOI: 10.1016/j.bpj.2009.03.014

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  21 in total

1.  Protein extraction using reverse micelles.

Authors:  K E Cöklen; T A Hatton
Journal:  Biotechnol Prog       Date:  1985-03

2.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

3.  NMR spectroscopy of proteins encapsulated in a positively charged surfactant.

Authors:  Brian G Lefebvre; Weixia Liu; Ronald W Peterson; Kathleen G Valentine; A Joshua Wand
Journal:  J Magn Reson       Date:  2005-04-07       Impact factor: 2.229

4.  Nanotube confinement denatures protein helices.

Authors:  Eric J Sorin; Vijay S Pande
Journal:  J Am Chem Soc       Date:  2006-05-17       Impact factor: 15.419

5.  Cold denaturation of encapsulated ubiquitin.

Authors:  Maxim S Pometun; Ronald W Peterson; Charles R Babu; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2006-08-23       Impact factor: 15.419

6.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

Authors:  Viktor Hornak; Robert Abel; Asim Okur; Bentley Strockbine; Adrian Roitberg; Carlos Simmerling
Journal:  Proteins       Date:  2006-11-15

7.  Helix formation inside a nanotube: possible influence of backbone-water hydrogen bonding by the confining surface through modulation of water activity.

Authors:  Huan-Xiang Zhou
Journal:  J Chem Phys       Date:  2007-12-28       Impact factor: 3.488

8.  Structural and catalytic properties of enzymes in reverse micelles.

Authors:  A L Creagh; J M Prausnitz; H W Blanch
Journal:  Enzyme Microb Technol       Date:  1993-05       Impact factor: 3.493

9.  High-resolution NMR of encapsulated proteins dissolved in low-viscosity fluids.

Authors:  A J Wand; M R Ehrhardt; P F Flynn
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-22       Impact factor: 11.205

Review 10.  Reverse micelles as hosts for proteins and small molecules.

Authors:  P L Luisi; M Giomini; M P Pileni; B H Robinson
Journal:  Biochim Biophys Acta       Date:  1988-02-24
View more
  11 in total

1.  Simulations of the confinement of ubiquitin in self-assembled reverse micelles.

Authors:  Jianhui Tian; Angel E García
Journal:  J Chem Phys       Date:  2011-06-14       Impact factor: 3.488

2.  Protein folding in a reverse micelle environment: the role of confinement and dehydration.

Authors:  Anna Victoria Martinez; Susan C DeSensi; Laura Dominguez; Eva Rivera; John E Straub
Journal:  J Chem Phys       Date:  2011-02-07       Impact factor: 3.488

3.  Characterization of a disordered protein during micellation: interactions of α-synuclein with sodium dodecyl sulfate.

Authors:  Jianhui Tian; Anurag Sethi; Divina Anunciado; Dung M Vu; S Gnanakaran
Journal:  J Phys Chem B       Date:  2012-04-06       Impact factor: 2.991

4.  Molecular dynamics simulations of cytochrome c unfolding in AOT reverse micelles: The first steps.

Authors:  S Abel; M Waks; M Marchi
Journal:  Eur Phys J E Soft Matter       Date:  2010-08-28       Impact factor: 1.890

5.  Exploring the role of hydration and confinement in the aggregation of amyloidogenic peptides Aβ(16-22) and Sup35(7-13) in AOT reverse micelles.

Authors:  Anna Victoria Martinez; Edyta Małolepsza; Eva Rivera; Qing Lu; John E Straub
Journal:  J Chem Phys       Date:  2014-12-14       Impact factor: 3.488

6.  Taste of sugar at the membrane: thermodynamics and kinetics of the interaction of a disaccharide with lipid bilayers.

Authors:  Jianhui Tian; Anurag Sethi; Basil I Swanson; Byron Goldstein; S Gnanakaran
Journal:  Biophys J       Date:  2013-02-05       Impact factor: 4.033

7.  Organization and dynamics of the N-terminal domain of chemokine receptor CXCR1 in reverse micelles: effect of graded hydration.

Authors:  Arunima Chaudhuri; Pritam Basu; Sourav Haldar; Mamata Kombrabail; G Krishnamoorthy; Krishna Rajarathnam; Amitabha Chattopadhyay
Journal:  J Phys Chem B       Date:  2013-01-28       Impact factor: 2.991

8.  Probing the structure and dynamics of confined water in AOT reverse micelles.

Authors:  Anna Victoria Martinez; Laura Dominguez; Edyta Małolepsza; Adam Moser; Zack Ziegler; John E Straub
Journal:  J Phys Chem B       Date:  2013-06-06       Impact factor: 2.991

9.  Biomolecular Crowding Arising from Small Molecules, Molecular Constraints, Surface Packing, and Nano-Confinement.

Authors:  Mary Rose Hilaire; Rachel M Abaskharon; Feng Gai
Journal:  J Phys Chem Lett       Date:  2015-06-18       Impact factor: 6.475

10.  Role of Charge and Solvation in the Structure and Dynamics of Alanine-Rich Peptide AKA2 in AOT Reverse Micelles.

Authors:  Anna Victoria Martinez; Edyta Małolepsza; Laura Domínguez; Qing Lu; John E Straub
Journal:  J Phys Chem B       Date:  2014-11-06       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.